Atomistry » Copper » PDB 6g50-6ied » 6hu9
Atomistry »
  Copper »
    PDB 6g50-6ied »
      6hu9 »

Copper in PDB 6hu9: III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae

Enzymatic activity of III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae

All present enzymatic activity of III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae:
1.10.2.2; 1.9.3.1;

Other elements in 6hu9:

The structure of III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Zinc (Zn) 2 atoms
Iron (Fe) 14 atoms
Calcium (Ca) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae (pdb code 6hu9). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae, PDB code: 6hu9:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;

Copper binding site 1 out of 6 in 6hu9

Go back to Copper Binding Sites List in 6hu9
Copper binding site 1 out of 6 in the III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Cu601

b:66.3
occ:1.00
NE2 a:HIS291 2.1 44.5 1.0
ND1 a:HIS241 2.1 40.2 1.0
NE2 a:HIS290 2.1 43.0 1.0
CE1 a:HIS291 2.7 44.5 1.0
CE1 a:HIS290 2.9 43.0 1.0
CG a:HIS241 3.0 40.2 1.0
CE1 a:HIS241 3.1 40.2 1.0
CD2 a:HIS291 3.2 44.5 1.0
CD2 a:HIS290 3.2 43.0 1.0
CB a:HIS241 3.3 40.2 1.0
ND1 a:HIS291 3.9 44.5 1.0
CA a:HIS241 4.0 40.2 1.0
ND1 a:HIS290 4.1 43.0 1.0
CG a:HIS291 4.1 44.5 1.0
CD2 a:HIS241 4.1 40.2 1.0
NE2 a:HIS241 4.2 40.2 1.0
CG a:HIS290 4.3 43.0 1.0
FE a:HEA603 4.5 54.3 1.0
CG2 a:VAL244 4.5 40.1 1.0
C1A a:HEA603 4.7 54.3 1.0
ND a:HEA603 4.7 54.3 1.0
NA a:HEA603 4.8 54.3 1.0
N a:HIS241 4.8 40.2 1.0
C4A a:HEA603 4.8 54.3 1.0
C2A a:HEA603 4.9 54.3 1.0
C4D a:HEA603 5.0 54.3 1.0

Copper binding site 2 out of 6 in 6hu9

Go back to Copper Binding Sites List in 6hu9
Copper binding site 2 out of 6 in the III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Cu301

b:69.9
occ:1.00
ND1 b:HIS186 2.1 44.5 1.0
SG b:CYS225 2.1 44.3 1.0
SD b:MET232 2.2 41.1 1.0
SG b:CYS221 2.2 43.3 1.0
CU2 b:CUA302 2.6 71.6 1.0
CE b:MET232 2.8 41.1 1.0
CB b:CYS221 3.0 43.3 1.0
CE1 b:HIS186 3.1 44.5 1.0
CG b:HIS186 3.1 44.5 1.0
CB b:CYS225 3.4 44.3 1.0
CB b:HIS186 3.4 44.5 1.0
CG b:MET232 3.8 41.1 1.0
CA b:HIS186 4.0 44.5 1.0
NE2 b:HIS186 4.2 44.5 1.0
CD2 b:HIS186 4.2 44.5 1.0
O b:GLU223 4.3 43.6 1.0
CB b:MET232 4.3 41.1 1.0
CA b:CYS221 4.5 43.3 1.0
ND1 b:HIS229 4.5 40.5 1.0
CA b:CYS225 4.7 44.3 1.0
N b:ASP187 4.8 43.6 1.0
C b:HIS186 4.9 44.5 1.0
CZ2 b:TRP126 5.0 40.0 1.0

Copper binding site 3 out of 6 in 6hu9

Go back to Copper Binding Sites List in 6hu9
Copper binding site 3 out of 6 in the III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Cu302

b:71.6
occ:1.00
ND1 b:HIS229 2.0 40.5 1.0
SG b:CYS225 2.1 44.3 1.0
SG b:CYS221 2.2 43.3 1.0
CE1 b:HIS229 2.4 40.5 1.0
O b:GLU223 2.5 43.6 1.0
CU1 b:CUA301 2.6 69.9 1.0
CB b:CYS221 2.8 43.3 1.0
CB b:CYS225 3.2 44.3 1.0
CG b:HIS229 3.4 40.5 1.0
O b:CYS221 3.6 43.3 1.0
O b:HIS229 3.6 40.5 1.0
NE2 b:HIS229 3.7 40.5 1.0
C b:GLU223 3.8 43.6 1.0
C b:CYS221 3.9 43.3 1.0
CA b:CYS221 4.0 43.3 1.0
CA b:HIS229 4.0 40.5 1.0
SD b:MET232 4.0 41.1 1.0
CB b:HIS229 4.1 40.5 1.0
N b:CYS225 4.2 44.3 1.0
CD2 b:HIS229 4.2 40.5 1.0
C b:HIS229 4.2 40.5 1.0
N b:GLU223 4.3 43.6 1.0
CA b:CYS225 4.3 44.3 1.0
ND1 b:HIS186 4.3 44.5 1.0
C b:LEU224 4.4 39.8 1.0
CA b:LEU224 4.6 39.8 1.0
N b:LEU224 4.6 39.8 1.0
CA b:GLU223 4.7 43.6 1.0
N b:SER222 4.9 41.4 1.0
CB b:MET232 4.9 41.1 1.0
N b:CYS221 4.9 43.3 1.0
O b:LEU224 5.0 39.8 1.0

Copper binding site 4 out of 6 in 6hu9

Go back to Copper Binding Sites List in 6hu9
Copper binding site 4 out of 6 in the III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
m:Cu601

b:57.9
occ:1.00
NE2 m:HIS291 2.1 44.7 1.0
ND1 m:HIS241 2.1 41.2 1.0
NE2 m:HIS290 2.2 45.5 1.0
CE1 m:HIS291 2.6 44.7 1.0
CE1 m:HIS290 3.1 45.5 1.0
CE1 m:HIS241 3.1 41.2 1.0
CG m:HIS241 3.1 41.2 1.0
CD2 m:HIS290 3.2 45.5 1.0
CD2 m:HIS291 3.2 44.7 1.0
CB m:HIS241 3.4 41.2 1.0
ND1 m:HIS291 3.7 44.7 1.0
CG m:HIS291 4.1 44.7 1.0
CA m:HIS241 4.1 41.2 1.0
FE m:HEA603 4.2 54.3 1.0
NE2 m:HIS241 4.2 41.2 1.0
CD2 m:HIS241 4.2 41.2 1.0
ND1 m:HIS290 4.2 45.5 1.0
CG m:HIS290 4.3 45.5 1.0
C1A m:HEA603 4.3 54.3 1.0
ND m:HEA603 4.3 54.3 1.0
CG2 m:VAL244 4.4 40.9 1.0
NA m:HEA603 4.5 54.3 1.0
C4A m:HEA603 4.6 54.3 1.0
C2A m:HEA603 4.6 54.3 1.0
C4D m:HEA603 4.6 54.3 1.0
C3A m:HEA603 4.7 54.3 1.0
CHA m:HEA603 4.8 54.3 1.0
NB m:HEA603 4.9 54.3 1.0
C1D m:HEA603 4.9 54.3 1.0
NC m:HEA603 5.0 54.3 1.0
N m:HIS241 5.0 41.2 1.0

Copper binding site 5 out of 6 in 6hu9

Go back to Copper Binding Sites List in 6hu9
Copper binding site 5 out of 6 in the III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
n:Cu301

b:80.7
occ:1.00
SG n:CYS225 2.0 55.4 1.0
ND1 n:HIS186 2.1 52.6 1.0
SD n:MET232 2.2 51.4 1.0
SG n:CYS221 2.3 52.4 1.0
CU2 n:CUA302 2.6 76.7 1.0
CE n:MET232 2.8 51.4 1.0
CB n:CYS225 3.0 55.4 1.0
CE1 n:HIS186 3.0 52.6 1.0
CB n:CYS221 3.0 52.4 1.0
CG n:HIS186 3.1 52.6 1.0
CB n:HIS186 3.5 52.6 1.0
CG n:MET232 4.0 51.4 1.0
NE2 n:HIS186 4.1 52.6 1.0
CA n:HIS186 4.1 52.6 1.0
CD2 n:HIS186 4.2 52.6 1.0
O n:GLU223 4.4 53.4 1.0
CA n:CYS225 4.4 55.4 1.0
CA n:CYS221 4.5 52.4 1.0
CB n:MET232 4.6 51.4 1.0
ND1 n:HIS229 4.7 50.8 1.0
N n:CYS225 4.9 55.4 1.0

Copper binding site 6 out of 6 in 6hu9

Go back to Copper Binding Sites List in 6hu9
Copper binding site 6 out of 6 in the III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of III2-IV2 Mitochondrial Respiratory Supercomplex From S. Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
n:Cu302

b:76.7
occ:1.00
ND1 n:HIS229 2.2 50.8 1.0
SG n:CYS225 2.2 55.4 1.0
SG n:CYS221 2.3 52.4 1.0
O n:GLU223 2.4 53.4 1.0
CU1 n:CUA301 2.6 80.7 1.0
CB n:CYS225 2.7 55.4 1.0
CE1 n:HIS229 3.1 50.8 1.0
CG n:HIS229 3.1 50.8 1.0
CB n:CYS221 3.2 52.4 1.0
N n:CYS225 3.3 55.4 1.0
CB n:HIS229 3.4 50.8 1.0
CA n:HIS229 3.5 50.8 1.0
CA n:CYS225 3.6 55.4 1.0
C n:GLU223 3.6 53.4 1.0
O n:HIS229 3.8 50.8 1.0
SD n:MET232 3.9 51.4 1.0
C n:LEU224 4.0 49.5 1.0
C n:HIS229 4.1 50.8 1.0
NE2 n:HIS229 4.2 50.8 1.0
CD2 n:HIS229 4.2 50.8 1.0
CA n:LEU224 4.3 49.5 1.0
O n:CYS221 4.3 52.4 1.0
ND1 n:HIS186 4.3 52.6 1.0
CA n:CYS221 4.4 52.4 1.0
C n:CYS221 4.4 52.4 1.0
N n:LEU224 4.4 49.5 1.0
N n:GLU223 4.4 53.4 1.0
CA n:GLU223 4.7 53.4 1.0
N n:HIS229 4.7 50.8 1.0
C n:CYS225 4.8 55.4 1.0
O n:LEU224 4.8 49.5 1.0

Reference:

A.M.Hartley, N.Lukoyanova, Y.Zhang, A.Cabrera-Orefice, S.Arnold, B.Meunier, N.Pinotsis, A.Marechal. Structure of Yeast Cytochrome C Oxidase in A Supercomplex with Cytochrome BC1. Nat. Struct. Mol. Biol. V. 26 78 2019.
ISSN: ESSN 1545-9985
PubMed: 30598554
DOI: 10.1038/S41594-018-0172-Z
Page generated: Sun Dec 13 11:22:59 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy