Atomistry » Copper » PDB 6fja-6ibi » 6h5y
Atomistry »
  Copper »
    PDB 6fja-6ibi »
      6h5y »

Copper in PDB 6h5y: PM1 Mutant, 7D5

Protein crystallography data

The structure of PM1 Mutant, 7D5, PDB code: 6h5y was solved by I.G.Munoz, F.De Salas, S.Camarero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 82.72 / 2.30
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 202.610, 202.610, 202.610, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 20.3

Copper Binding Sites:

The binding sites of Copper atom in the PM1 Mutant, 7D5 (pdb code 6h5y). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the PM1 Mutant, 7D5, PDB code: 6h5y:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Copper binding site 1 out of 8 in 6h5y

Go back to Copper Binding Sites List in 6h5y
Copper binding site 1 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of PM1 Mutant, 7D5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu503

b:56.4
occ:1.00
NE2 A:HIS109 2.1 53.6 1.0
ND1 A:HIS66 2.1 48.8 1.0
NE2 A:HIS451 2.3 46.6 1.0
CE1 A:HIS109 3.0 47.7 1.0
CE1 A:HIS66 3.0 53.1 1.0
CD2 A:HIS109 3.1 45.8 1.0
CG A:HIS66 3.1 50.8 1.0
CE1 A:HIS451 3.2 46.9 1.0
CD2 A:HIS451 3.3 46.7 1.0
CB A:HIS66 3.5 52.6 1.0
CZ2 A:TRP107 3.6 48.5 1.0
CD2 A:HIS64 3.7 52.0 1.0
CE2 A:TRP107 3.9 48.9 1.0
NE1 A:TRP107 4.0 49.4 1.0
CU A:CU505 4.1 76.4 1.0
NE2 A:HIS64 4.1 50.6 1.0
ND1 A:HIS109 4.1 53.5 1.0
NE2 A:HIS66 4.2 55.7 1.0
CG A:HIS109 4.2 50.4 1.0
CD2 A:HIS66 4.2 39.4 1.0
CB A:ALA240 4.3 52.4 1.0
ND1 A:HIS451 4.3 49.3 1.0
CH2 A:TRP107 4.4 48.6 1.0
CG A:HIS451 4.4 49.8 1.0
CD2 A:HIS397 4.4 51.8 1.0
NE2 A:HIS397 4.6 50.9 1.0
CA A:HIS66 4.6 48.8 1.0
CD2 A:TRP107 4.9 47.0 1.0
CG A:HIS64 4.9 56.6 1.0
CU A:CU504 5.0 58.6 1.0
CD1 A:TRP107 5.0 51.1 1.0

Copper binding site 2 out of 8 in 6h5y

Go back to Copper Binding Sites List in 6h5y
Copper binding site 2 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of PM1 Mutant, 7D5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu504

b:58.6
occ:1.00
NE2 A:HIS449 2.0 59.7 1.0
NE2 A:HIS111 2.1 55.3 1.0
NE2 A:HIS399 2.1 53.6 1.0
CD2 A:HIS449 2.9 53.7 1.0
CE1 A:HIS111 3.0 52.6 1.0
CE1 A:HIS449 3.1 55.7 1.0
CE1 A:HIS399 3.1 53.5 1.0
CD2 A:HIS111 3.1 52.0 1.0
CD2 A:HIS399 3.1 48.7 1.0
CD2 A:HIS397 4.0 51.8 1.0
CG A:HIS449 4.1 55.7 1.0
ND1 A:HIS449 4.1 50.9 1.0
ND1 A:HIS111 4.1 50.0 1.0
CD2 A:PHE447 4.2 67.3 1.0
ND1 A:HIS399 4.2 52.2 1.0
CU A:CU505 4.2 76.4 1.0
CG A:HIS111 4.2 55.7 1.0
CG A:HIS399 4.3 54.9 1.0
CD2 A:HIS64 4.4 52.0 1.0
NE2 A:HIS397 4.5 50.9 1.0
CB A:PHE447 4.6 61.3 1.0
NE2 A:HIS64 4.6 50.6 1.0
CG A:PRO79 4.7 54.7 1.0
CG A:PHE447 4.7 60.3 1.0
CD2 A:HIS451 4.8 46.7 1.0
NE2 A:HIS451 4.8 46.6 1.0
CE2 A:PHE447 5.0 69.5 1.0
CU A:CU503 5.0 56.4 1.0

Copper binding site 3 out of 8 in 6h5y

Go back to Copper Binding Sites List in 6h5y
Copper binding site 3 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of PM1 Mutant, 7D5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu505

b:76.4
occ:1.00
NE2 A:HIS64 1.9 50.6 1.0
NE2 A:HIS397 2.0 50.9 1.0
CE1 A:HIS64 2.7 52.2 1.0
CD2 A:HIS64 2.9 52.0 1.0
CE1 A:HIS397 2.9 53.2 1.0
CD2 A:HIS397 3.0 51.8 1.0
NE2 A:HIS399 3.2 53.6 1.0
CD2 A:HIS399 3.4 48.7 1.0
ND1 A:HIS66 3.4 48.8 1.0
CE1 A:HIS399 3.5 53.5 1.0
CG A:HIS399 3.7 54.9 1.0
ND1 A:HIS399 3.7 52.2 1.0
CG A:HIS66 3.7 50.8 1.0
CE1 A:HIS66 3.8 53.1 1.0
ND1 A:HIS64 3.8 56.0 1.0
CG A:HIS64 4.0 56.6 1.0
CA A:HIS66 4.0 48.8 1.0
ND1 A:HIS397 4.1 56.4 1.0
CG A:HIS397 4.1 57.4 1.0
CU A:CU503 4.1 56.4 1.0
N A:GLY67 4.1 46.6 1.0
CB A:HIS66 4.2 52.6 1.0
CU A:CU504 4.2 58.6 1.0
CD2 A:HIS66 4.2 39.4 1.0
NE2 A:HIS66 4.3 55.7 1.0
CA A:HIS399 4.5 50.2 1.0
C A:HIS66 4.6 50.9 1.0
CB A:HIS399 4.6 53.5 1.0
N A:HIS399 4.8 49.8 1.0

Copper binding site 4 out of 8 in 6h5y

Go back to Copper Binding Sites List in 6h5y
Copper binding site 4 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of PM1 Mutant, 7D5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu506

b:62.7
occ:1.00
ND1 A:HIS455 2.1 56.2 1.0
ND1 A:HIS394 2.1 59.2 1.0
SG A:CYS450 2.3 57.2 1.0
CE1 A:HIS455 3.0 55.5 1.0
CG A:HIS455 3.1 53.9 1.0
CG A:HIS394 3.1 61.4 1.0
CE1 A:HIS394 3.1 60.6 1.0
CB A:HIS394 3.4 59.6 1.0
CB A:HIS455 3.4 57.5 1.0
CB A:CYS450 3.5 56.6 1.0
CD2 A:PHE460 3.7 49.3 1.0
CD1 A:ILE452 3.8 53.3 1.0
CB A:ILE452 3.8 52.2 1.0
CE2 A:PHE460 3.8 50.8 1.0
CA A:HIS394 3.9 60.0 1.0
NE2 A:HIS455 4.1 62.0 1.0
CD2 A:HIS455 4.2 55.9 1.0
CG1 A:ILE452 4.2 49.9 1.0
NE2 A:HIS394 4.2 58.1 1.0
CD2 A:HIS394 4.2 61.2 1.0
CG2 A:ILE452 4.6 48.9 1.0
N A:ILE452 4.6 57.1 1.0
CD A:PRO395 4.7 56.2 1.0
CA A:ILE452 4.7 53.6 1.0
O A:ILE452 4.7 56.9 1.0
O A:PRO393 4.8 60.1 1.0
N A:HIS394 4.8 59.4 1.0
CA A:CYS450 4.9 59.4 1.0
C A:HIS394 4.9 59.4 1.0
O A:GLY391 4.9 67.4 1.0
CA A:HIS455 5.0 56.2 1.0

Copper binding site 5 out of 8 in 6h5y

Go back to Copper Binding Sites List in 6h5y
Copper binding site 5 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of PM1 Mutant, 7D5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu503

b:67.4
occ:1.00
NE2 B:HIS399 2.0 54.1 1.0
NE2 B:HIS111 2.2 62.7 1.0
NE2 B:HIS449 2.2 62.0 1.0
CE1 B:HIS399 2.5 52.2 1.0
CE1 B:HIS111 2.9 66.4 1.0
CD2 B:HIS449 3.0 59.0 1.0
CE1 B:HIS449 3.2 56.5 1.0
CD2 B:HIS399 3.2 53.1 1.0
CD2 B:HIS111 3.3 62.4 1.0
CD2 B:HIS397 3.7 56.0 1.0
ND1 B:HIS399 3.8 59.8 1.0
CD2 B:PHE447 4.0 65.9 1.0
ND1 B:HIS111 4.1 60.2 1.0
NE2 B:HIS397 4.1 52.6 1.0
CG B:HIS399 4.2 57.3 1.0
CG B:HIS449 4.2 61.2 1.0
CD2 B:HIS64 4.2 55.4 1.0
ND1 B:HIS449 4.3 61.0 1.0
CG B:HIS111 4.3 61.7 1.0
CB B:PHE447 4.3 57.3 1.0
NE2 B:HIS64 4.4 56.6 1.0
CU B:CU504 4.5 73.2 1.0
CG B:PHE447 4.7 60.1 1.0
CG B:PRO79 4.8 54.6 1.0
NE2 B:HIS451 4.9 53.9 1.0
CG B:HIS397 4.9 57.4 1.0
CU B:CU505 4.9 60.5 1.0
CD2 B:HIS451 5.0 52.4 1.0
CE2 B:PHE447 5.0 66.7 1.0

Copper binding site 6 out of 8 in 6h5y

Go back to Copper Binding Sites List in 6h5y
Copper binding site 6 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of PM1 Mutant, 7D5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu504

b:73.2
occ:1.00
NE2 B:HIS397 2.0 52.6 1.0
NE2 B:HIS64 2.0 56.6 1.0
CE1 B:HIS397 2.6 56.9 1.0
O B:HOH628 2.7 52.6 1.0
CE1 B:HIS64 2.7 56.7 1.0
CD2 B:HIS397 3.3 56.0 1.0
CD2 B:HIS64 3.3 55.4 1.0
ND1 B:HIS66 3.3 54.6 1.0
NE2 B:HIS399 3.4 54.1 1.0
CD2 B:HIS399 3.5 53.1 1.0
CE1 B:HIS399 3.5 52.2 1.0
CG B:HIS399 3.6 57.3 1.0
CG B:HIS66 3.6 55.2 1.0
ND1 B:HIS399 3.6 59.8 1.0
CA B:HIS66 3.7 54.0 1.0
CE1 B:HIS66 3.8 53.1 1.0
ND1 B:HIS397 3.8 55.7 1.0
N B:GLY67 3.9 52.5 1.0
ND1 B:HIS64 3.9 57.0 1.0
CB B:HIS66 3.9 44.1 1.0
CG B:HIS397 4.2 57.4 1.0
CD2 B:HIS66 4.2 46.6 1.0
CG B:HIS64 4.2 56.8 1.0
CU B:CU505 4.2 60.5 1.0
C B:HIS66 4.3 52.4 1.0
NE2 B:HIS66 4.3 56.8 1.0
CB B:HIS399 4.4 56.1 1.0
CA B:HIS399 4.4 56.6 1.0
CU B:CU503 4.5 67.4 1.0
N B:HIS66 4.8 51.4 1.0
CA B:GLY67 4.9 48.4 1.0
N B:HIS399 5.0 52.5 1.0

Copper binding site 7 out of 8 in 6h5y

Go back to Copper Binding Sites List in 6h5y
Copper binding site 7 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of PM1 Mutant, 7D5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu505

b:60.5
occ:1.00
NE2 B:HIS451 2.0 53.9 1.0
ND1 B:HIS66 2.1 54.6 1.0
NE2 B:HIS109 2.2 50.0 1.0
CE1 B:HIS451 2.9 48.1 1.0
CE1 B:HIS109 3.1 51.3 1.0
CE1 B:HIS66 3.1 53.1 1.0
CD2 B:HIS451 3.1 52.4 1.0
CG B:HIS66 3.1 55.2 1.0
CD2 B:HIS109 3.3 53.9 1.0
CB B:HIS66 3.5 44.1 1.0
CZ2 B:TRP107 3.6 50.8 1.0
CD2 B:HIS64 3.7 55.4 1.0
NE2 B:HIS64 4.0 56.6 1.0
CE2 B:TRP107 4.0 47.7 1.0
ND1 B:HIS451 4.1 53.6 1.0
CD2 B:HIS397 4.1 56.0 1.0
NE2 B:HIS397 4.1 52.6 1.0
CG B:HIS451 4.2 55.2 1.0
NE2 B:HIS66 4.2 56.8 1.0
ND1 B:HIS109 4.2 48.1 1.0
CB B:ALA240 4.2 56.0 1.0
NE1 B:TRP107 4.2 52.4 1.0
CD2 B:HIS66 4.2 46.6 1.0
CU B:CU504 4.2 73.2 1.0
CH2 B:TRP107 4.3 50.9 1.0
CG B:HIS109 4.3 51.4 1.0
CA B:HIS66 4.7 54.0 1.0
CU B:CU503 4.9 67.4 1.0
CD2 B:TRP107 5.0 52.8 1.0

Copper binding site 8 out of 8 in 6h5y

Go back to Copper Binding Sites List in 6h5y
Copper binding site 8 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of PM1 Mutant, 7D5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu506

b:70.2
occ:1.00
ND1 B:HIS394 2.1 68.7 1.0
ND1 B:HIS455 2.2 66.9 1.0
SG B:CYS450 2.3 62.1 1.0
CE1 B:HIS394 2.9 72.5 1.0
CG B:HIS455 3.0 64.6 1.0
CG B:HIS394 3.1 68.7 1.0
CE1 B:HIS455 3.2 60.5 1.0
CB B:HIS455 3.3 64.8 1.0
CB B:CYS450 3.3 58.4 1.0
CD1 B:ILE452 3.6 56.0 1.0
CB B:HIS394 3.6 62.8 1.0
CB B:ILE452 3.8 63.2 1.0
CD2 B:PHE460 3.9 54.5 1.0
CG1 B:ILE452 3.9 59.0 1.0
NE2 B:HIS394 3.9 71.9 1.0
CA B:HIS394 4.1 59.3 1.0
CD2 B:HIS394 4.1 70.6 1.0
CD2 B:HIS455 4.1 64.7 1.0
NE2 B:HIS455 4.2 58.8 1.0
CE2 B:PHE460 4.2 61.0 1.0
CG2 B:ILE452 4.6 59.6 1.0
CD B:PRO395 4.6 53.0 1.0
O B:GLY391 4.6 62.4 1.0
CA B:CYS450 4.7 53.9 1.0
CA B:HIS455 4.8 64.3 1.0
N B:ILE452 4.8 65.4 1.0
CA B:ILE452 4.9 65.3 1.0
O B:ILE452 4.9 63.5 1.0

Reference:

F.De Salas, I.Pardo, H.J.Salavagione, P.Aza, E.Amougi, J.Vind, A.T.Martinez, S.Camarero. Advanced Synthesis of Conductive Polyaniline Using Laccase As Biocatalyst. Plos One V. 11 64958 2016.
ISSN: ESSN 1932-6203
PubMed: 27741301
DOI: 10.1371/JOURNAL.PONE.0164958
Page generated: Sun Dec 13 11:22:46 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy