Copper in PDB 6h5y: PM1 Mutant, 7D5

The structure of PM1 Mutant, 7D5, PDB code: 6h5y was solved by I.G.Munoz, F.De Salas, S.Camarero, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	82.72 / 2.30
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	202.610, 202.610, 202.610, 90.00, 90.00, 90.00
R / Rfree (%)	16.7 / 20.3

The binding sites of Copper atom in the PM1 Mutant, 7D5 (pdb code 6h5y). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the PM1 Mutant, 7D5, PDB code: 6h5y:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Copper binding site 1 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of PM1 Mutant, 7D5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu503 b:56.4 occ:1.00 NE2 A:HIS109 2.1 53.6 1.0 ND1 A:HIS66 2.1 48.8 1.0 NE2 A:HIS451 2.3 46.6 1.0 CE1 A:HIS109 3.0 47.7 1.0 CE1 A:HIS66 3.0 53.1 1.0 CD2 A:HIS109 3.1 45.8 1.0 CG A:HIS66 3.1 50.8 1.0 CE1 A:HIS451 3.2 46.9 1.0 CD2 A:HIS451 3.3 46.7 1.0 CB A:HIS66 3.5 52.6 1.0 CZ2 A:TRP107 3.6 48.5 1.0 CD2 A:HIS64 3.7 52.0 1.0 CE2 A:TRP107 3.9 48.9 1.0 NE1 A:TRP107 4.0 49.4 1.0 CU A:CU505 4.1 76.4 1.0 NE2 A:HIS64 4.1 50.6 1.0 ND1 A:HIS109 4.1 53.5 1.0 NE2 A:HIS66 4.2 55.7 1.0 CG A:HIS109 4.2 50.4 1.0 CD2 A:HIS66 4.2 39.4 1.0 CB A:ALA240 4.3 52.4 1.0 ND1 A:HIS451 4.3 49.3 1.0 CH2 A:TRP107 4.4 48.6 1.0 CG A:HIS451 4.4 49.8 1.0 CD2 A:HIS397 4.4 51.8 1.0 NE2 A:HIS397 4.6 50.9 1.0 CA A:HIS66 4.6 48.8 1.0 CD2 A:TRP107 4.9 47.0 1.0 CG A:HIS64 4.9 56.6 1.0 CU A:CU504 5.0 58.6 1.0 CD1 A:TRP107 5.0 51.1 1.0

Copper binding site 2 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of PM1 Mutant, 7D5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu504 b:58.6 occ:1.00 NE2 A:HIS449 2.0 59.7 1.0 NE2 A:HIS111 2.1 55.3 1.0 NE2 A:HIS399 2.1 53.6 1.0 CD2 A:HIS449 2.9 53.7 1.0 CE1 A:HIS111 3.0 52.6 1.0 CE1 A:HIS449 3.1 55.7 1.0 CE1 A:HIS399 3.1 53.5 1.0 CD2 A:HIS111 3.1 52.0 1.0 CD2 A:HIS399 3.1 48.7 1.0 CD2 A:HIS397 4.0 51.8 1.0 CG A:HIS449 4.1 55.7 1.0 ND1 A:HIS449 4.1 50.9 1.0 ND1 A:HIS111 4.1 50.0 1.0 CD2 A:PHE447 4.2 67.3 1.0 ND1 A:HIS399 4.2 52.2 1.0 CU A:CU505 4.2 76.4 1.0 CG A:HIS111 4.2 55.7 1.0 CG A:HIS399 4.3 54.9 1.0 CD2 A:HIS64 4.4 52.0 1.0 NE2 A:HIS397 4.5 50.9 1.0 CB A:PHE447 4.6 61.3 1.0 NE2 A:HIS64 4.6 50.6 1.0 CG A:PRO79 4.7 54.7 1.0 CG A:PHE447 4.7 60.3 1.0 CD2 A:HIS451 4.8 46.7 1.0 NE2 A:HIS451 4.8 46.6 1.0 CE2 A:PHE447 5.0 69.5 1.0 CU A:CU503 5.0 56.4 1.0

Copper binding site 3 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of PM1 Mutant, 7D5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu505 b:76.4 occ:1.00 NE2 A:HIS64 1.9 50.6 1.0 NE2 A:HIS397 2.0 50.9 1.0 CE1 A:HIS64 2.7 52.2 1.0 CD2 A:HIS64 2.9 52.0 1.0 CE1 A:HIS397 2.9 53.2 1.0 CD2 A:HIS397 3.0 51.8 1.0 NE2 A:HIS399 3.2 53.6 1.0 CD2 A:HIS399 3.4 48.7 1.0 ND1 A:HIS66 3.4 48.8 1.0 CE1 A:HIS399 3.5 53.5 1.0 CG A:HIS399 3.7 54.9 1.0 ND1 A:HIS399 3.7 52.2 1.0 CG A:HIS66 3.7 50.8 1.0 CE1 A:HIS66 3.8 53.1 1.0 ND1 A:HIS64 3.8 56.0 1.0 CG A:HIS64 4.0 56.6 1.0 CA A:HIS66 4.0 48.8 1.0 ND1 A:HIS397 4.1 56.4 1.0 CG A:HIS397 4.1 57.4 1.0 CU A:CU503 4.1 56.4 1.0 N A:GLY67 4.1 46.6 1.0 CB A:HIS66 4.2 52.6 1.0 CU A:CU504 4.2 58.6 1.0 CD2 A:HIS66 4.2 39.4 1.0 NE2 A:HIS66 4.3 55.7 1.0 CA A:HIS399 4.5 50.2 1.0 C A:HIS66 4.6 50.9 1.0 CB A:HIS399 4.6 53.5 1.0 N A:HIS399 4.8 49.8 1.0

Copper binding site 4 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of PM1 Mutant, 7D5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu506 b:62.7 occ:1.00 ND1 A:HIS455 2.1 56.2 1.0 ND1 A:HIS394 2.1 59.2 1.0 SG A:CYS450 2.3 57.2 1.0 CE1 A:HIS455 3.0 55.5 1.0 CG A:HIS455 3.1 53.9 1.0 CG A:HIS394 3.1 61.4 1.0 CE1 A:HIS394 3.1 60.6 1.0 CB A:HIS394 3.4 59.6 1.0 CB A:HIS455 3.4 57.5 1.0 CB A:CYS450 3.5 56.6 1.0 CD2 A:PHE460 3.7 49.3 1.0 CD1 A:ILE452 3.8 53.3 1.0 CB A:ILE452 3.8 52.2 1.0 CE2 A:PHE460 3.8 50.8 1.0 CA A:HIS394 3.9 60.0 1.0 NE2 A:HIS455 4.1 62.0 1.0 CD2 A:HIS455 4.2 55.9 1.0 CG1 A:ILE452 4.2 49.9 1.0 NE2 A:HIS394 4.2 58.1 1.0 CD2 A:HIS394 4.2 61.2 1.0 CG2 A:ILE452 4.6 48.9 1.0 N A:ILE452 4.6 57.1 1.0 CD A:PRO395 4.7 56.2 1.0 CA A:ILE452 4.7 53.6 1.0 O A:ILE452 4.7 56.9 1.0 O A:PRO393 4.8 60.1 1.0 N A:HIS394 4.8 59.4 1.0 CA A:CYS450 4.9 59.4 1.0 C A:HIS394 4.9 59.4 1.0 O A:GLY391 4.9 67.4 1.0 CA A:HIS455 5.0 56.2 1.0

Copper binding site 5 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of PM1 Mutant, 7D5 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu503 b:67.4 occ:1.00 NE2 B:HIS399 2.0 54.1 1.0 NE2 B:HIS111 2.2 62.7 1.0 NE2 B:HIS449 2.2 62.0 1.0 CE1 B:HIS399 2.5 52.2 1.0 CE1 B:HIS111 2.9 66.4 1.0 CD2 B:HIS449 3.0 59.0 1.0 CE1 B:HIS449 3.2 56.5 1.0 CD2 B:HIS399 3.2 53.1 1.0 CD2 B:HIS111 3.3 62.4 1.0 CD2 B:HIS397 3.7 56.0 1.0 ND1 B:HIS399 3.8 59.8 1.0 CD2 B:PHE447 4.0 65.9 1.0 ND1 B:HIS111 4.1 60.2 1.0 NE2 B:HIS397 4.1 52.6 1.0 CG B:HIS399 4.2 57.3 1.0 CG B:HIS449 4.2 61.2 1.0 CD2 B:HIS64 4.2 55.4 1.0 ND1 B:HIS449 4.3 61.0 1.0 CG B:HIS111 4.3 61.7 1.0 CB B:PHE447 4.3 57.3 1.0 NE2 B:HIS64 4.4 56.6 1.0 CU B:CU504 4.5 73.2 1.0 CG B:PHE447 4.7 60.1 1.0 CG B:PRO79 4.8 54.6 1.0 NE2 B:HIS451 4.9 53.9 1.0 CG B:HIS397 4.9 57.4 1.0 CU B:CU505 4.9 60.5 1.0 CD2 B:HIS451 5.0 52.4 1.0 CE2 B:PHE447 5.0 66.7 1.0

Copper binding site 6 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of PM1 Mutant, 7D5 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu504 b:73.2 occ:1.00 NE2 B:HIS397 2.0 52.6 1.0 NE2 B:HIS64 2.0 56.6 1.0 CE1 B:HIS397 2.6 56.9 1.0 O B:HOH628 2.7 52.6 1.0 CE1 B:HIS64 2.7 56.7 1.0 CD2 B:HIS397 3.3 56.0 1.0 CD2 B:HIS64 3.3 55.4 1.0 ND1 B:HIS66 3.3 54.6 1.0 NE2 B:HIS399 3.4 54.1 1.0 CD2 B:HIS399 3.5 53.1 1.0 CE1 B:HIS399 3.5 52.2 1.0 CG B:HIS399 3.6 57.3 1.0 CG B:HIS66 3.6 55.2 1.0 ND1 B:HIS399 3.6 59.8 1.0 CA B:HIS66 3.7 54.0 1.0 CE1 B:HIS66 3.8 53.1 1.0 ND1 B:HIS397 3.8 55.7 1.0 N B:GLY67 3.9 52.5 1.0 ND1 B:HIS64 3.9 57.0 1.0 CB B:HIS66 3.9 44.1 1.0 CG B:HIS397 4.2 57.4 1.0 CD2 B:HIS66 4.2 46.6 1.0 CG B:HIS64 4.2 56.8 1.0 CU B:CU505 4.2 60.5 1.0 C B:HIS66 4.3 52.4 1.0 NE2 B:HIS66 4.3 56.8 1.0 CB B:HIS399 4.4 56.1 1.0 CA B:HIS399 4.4 56.6 1.0 CU B:CU503 4.5 67.4 1.0 N B:HIS66 4.8 51.4 1.0 CA B:GLY67 4.9 48.4 1.0 N B:HIS399 5.0 52.5 1.0

Copper binding site 7 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of PM1 Mutant, 7D5 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu505 b:60.5 occ:1.00 NE2 B:HIS451 2.0 53.9 1.0 ND1 B:HIS66 2.1 54.6 1.0 NE2 B:HIS109 2.2 50.0 1.0 CE1 B:HIS451 2.9 48.1 1.0 CE1 B:HIS109 3.1 51.3 1.0 CE1 B:HIS66 3.1 53.1 1.0 CD2 B:HIS451 3.1 52.4 1.0 CG B:HIS66 3.1 55.2 1.0 CD2 B:HIS109 3.3 53.9 1.0 CB B:HIS66 3.5 44.1 1.0 CZ2 B:TRP107 3.6 50.8 1.0 CD2 B:HIS64 3.7 55.4 1.0 NE2 B:HIS64 4.0 56.6 1.0 CE2 B:TRP107 4.0 47.7 1.0 ND1 B:HIS451 4.1 53.6 1.0 CD2 B:HIS397 4.1 56.0 1.0 NE2 B:HIS397 4.1 52.6 1.0 CG B:HIS451 4.2 55.2 1.0 NE2 B:HIS66 4.2 56.8 1.0 ND1 B:HIS109 4.2 48.1 1.0 CB B:ALA240 4.2 56.0 1.0 NE1 B:TRP107 4.2 52.4 1.0 CD2 B:HIS66 4.2 46.6 1.0 CU B:CU504 4.2 73.2 1.0 CH2 B:TRP107 4.3 50.9 1.0 CG B:HIS109 4.3 51.4 1.0 CA B:HIS66 4.7 54.0 1.0 CU B:CU503 4.9 67.4 1.0 CD2 B:TRP107 5.0 52.8 1.0

Copper binding site 8 out of 8 in the PM1 Mutant, 7D5


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of PM1 Mutant, 7D5 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu506 b:70.2 occ:1.00 ND1 B:HIS394 2.1 68.7 1.0 ND1 B:HIS455 2.2 66.9 1.0 SG B:CYS450 2.3 62.1 1.0 CE1 B:HIS394 2.9 72.5 1.0 CG B:HIS455 3.0 64.6 1.0 CG B:HIS394 3.1 68.7 1.0 CE1 B:HIS455 3.2 60.5 1.0 CB B:HIS455 3.3 64.8 1.0 CB B:CYS450 3.3 58.4 1.0 CD1 B:ILE452 3.6 56.0 1.0 CB B:HIS394 3.6 62.8 1.0 CB B:ILE452 3.8 63.2 1.0 CD2 B:PHE460 3.9 54.5 1.0 CG1 B:ILE452 3.9 59.0 1.0 NE2 B:HIS394 3.9 71.9 1.0 CA B:HIS394 4.1 59.3 1.0 CD2 B:HIS394 4.1 70.6 1.0 CD2 B:HIS455 4.1 64.7 1.0 NE2 B:HIS455 4.2 58.8 1.0 CE2 B:PHE460 4.2 61.0 1.0 CG2 B:ILE452 4.6 59.6 1.0 CD B:PRO395 4.6 53.0 1.0 O B:GLY391 4.6 62.4 1.0 CA B:CYS450 4.7 53.9 1.0 CA B:HIS455 4.8 64.3 1.0 N B:ILE452 4.8 65.4 1.0 CA B:ILE452 4.9 65.3 1.0 O B:ILE452 4.9 63.5 1.0

F.De Salas, I.Pardo, H.J.Salavagione, P.Aza, E.Amougi, J.Vind, A.T.Martinez, S.Camarero. Advanced Synthesis of Conductive Polyaniline Using Laccase As Biocatalyst. Plos One V. 11 64958 2016.
ISSN: ESSN 1932-6203
PubMed: 27741301
DOI: 10.1371/JOURNAL.PONE.0164958