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Copper in PDB 6h1z: AFGH61B Wild-Type

Protein crystallography data

The structure of AFGH61B Wild-Type, PDB code: 6h1z was solved by L.Lo Leggio, J.C.N.Poulsen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.43 / 1.57
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 37.670, 43.850, 60.010, 89.62, 108.33, 109.20
R / Rfree (%) 12.9 / 16.7

Other elements in 6h1z:

The structure of AFGH61B Wild-Type also contains other interesting chemical elements:

Sodium (Na) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the AFGH61B Wild-Type (pdb code 6h1z). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the AFGH61B Wild-Type, PDB code: 6h1z:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6h1z

Go back to Copper Binding Sites List in 6h1z
Copper binding site 1 out of 2 in the AFGH61B Wild-Type


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of AFGH61B Wild-Type within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu301

b:15.7
occ:0.30
ND1 A:HIC1 1.9 40.8 1.0
NE2 A:HIS86 2.0 14.0 1.0
N A:HIC1 2.4 30.2 1.0
CG A:HIC1 2.8 37.6 1.0
CE1 A:HIS86 2.9 15.3 1.0
CE1 A:HIC1 2.9 38.6 1.0
CD2 A:HIS86 3.0 14.2 1.0
CB A:HIC1 3.4 34.5 1.0
CA A:HIC1 3.4 30.2 1.0
OH A:TYR175 3.5 13.4 1.0
ND1 A:HIS86 4.0 14.3 1.0
CD2 A:HIC1 4.0 37.4 1.0
NE2 A:HIC1 4.0 41.3 1.0
CG A:HIS86 4.0 12.9 1.0
CG A:PRO83 4.3 18.3 1.0
OE1 A:GLN173 4.4 15.1 1.0
CZ A:TYR175 4.6 11.2 1.0
C A:HIC1 4.6 26.8 1.0
O A:HOH522 4.8 36.9 1.0
O A:HIC1 4.9 27.6 1.0

Copper binding site 2 out of 2 in 6h1z

Go back to Copper Binding Sites List in 6h1z
Copper binding site 2 out of 2 in the AFGH61B Wild-Type


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of AFGH61B Wild-Type within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu301

b:21.9
occ:0.20
ND1 B:HIC1 1.9 44.0 1.0
N B:HIC1 2.1 29.0 1.0
NE2 B:HIS86 2.6 23.0 1.0
CE1 B:HIC1 2.6 44.2 1.0
CG B:HIC1 3.1 41.4 1.0
CD2 B:HIS86 3.2 22.4 1.0
OH B:TYR175 3.3 13.4 1.0
CA B:HIC1 3.3 27.9 1.0
CE1 B:HIS86 3.7 21.7 1.0
CB B:HIC1 3.8 35.1 1.0
NE2 B:HIC1 3.8 50.2 1.0
OE1 B:GLN173 4.1 15.9 1.0
CD2 B:HIC1 4.1 45.6 1.0
CZ B:TYR175 4.4 11.6 1.0
CG B:PRO83 4.4 20.6 1.0
CG B:HIS86 4.4 20.4 1.0
C B:HIC1 4.5 26.6 1.0
ND1 B:HIS86 4.7 21.3 1.0
O B:HIC1 4.9 26.7 1.0
CE2 B:TYR175 5.0 10.9 1.0

Reference:

L.Lo Leggio, C.D.Weihe, J.N.Poulsen, M.Sweeney, F.Rasmussen, J.Lin, L.De Maria, M.Wogulis. Structure of A Lytic Polysaccharide Monooxygenase From Aspergillus Fumigatus and An Engineered Thermostable Variant. Carbohydr. Res. V. 469 55 2018.
ISSN: ISSN 1873-426X
PubMed: 30296642
DOI: 10.1016/J.CARRES.2018.08.009
Page generated: Sun Dec 13 11:22:46 2020

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