Atomistry » Copper » PDB 6g50-6ied » 6gtj
Atomistry »
  Copper »
    PDB 6g50-6ied »
      6gtj »

Copper in PDB 6gtj: Neutron Crystal Structure For Copper Nitrite Reductase From Achromobacter Cycloclastes at 1.8 A Resolution

Enzymatic activity of Neutron Crystal Structure For Copper Nitrite Reductase From Achromobacter Cycloclastes at 1.8 A Resolution

All present enzymatic activity of Neutron Crystal Structure For Copper Nitrite Reductase From Achromobacter Cycloclastes at 1.8 A Resolution:
1.7.2.1;

Copper Binding Sites:

The binding sites of Copper atom in the Neutron Crystal Structure For Copper Nitrite Reductase From Achromobacter Cycloclastes at 1.8 A Resolution (pdb code 6gtj). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Neutron Crystal Structure For Copper Nitrite Reductase From Achromobacter Cycloclastes at 1.8 A Resolution, PDB code: 6gtj:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6gtj

Go back to Copper Binding Sites List in 6gtj
Copper binding site 1 out of 2 in the Neutron Crystal Structure For Copper Nitrite Reductase From Achromobacter Cycloclastes at 1.8 A Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Neutron Crystal Structure For Copper Nitrite Reductase From Achromobacter Cycloclastes at 1.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:7.6
occ:1.00
ND1 A:HIS145 2.0 10.8 1.0
ND1 A:HIS95 2.1 10.5 1.0
SG A:CYS136 2.2 11.0 1.0
SD A:MET150 2.6 11.2 1.0
CE1 A:HIS145 2.8 9.8 1.0
DE1 A:HIS145 2.9 11.8 1.0
DB3 A:HIS145 3.0 11.8 1.0
DB3 A:HIS95 3.0 15.0 1.0
CE1 A:HIS95 3.0 13.4 1.0
CG A:HIS145 3.1 10.8 1.0
CG A:HIS95 3.1 13.9 1.0
DA A:HIS95 3.1 16.6 1.0
CB A:CYS136 3.2 12.9 1.0
DE1 A:HIS95 3.2 16.0 1.0
DB3 A:CYS136 3.3 15.4 1.0
DE1 A:MET150 3.3 13.7 1.0
DB2 A:CYS136 3.3 15.4 1.0
CE A:MET150 3.4 11.5 1.0
CB A:HIS95 3.4 12.6 1.0
DG3 A:PRO138 3.4 15.5 1.0
DE2 A:MET150 3.6 13.7 1.0
CB A:HIS145 3.6 9.9 1.0
D A:ASN96 3.8 13.8 1.0
CA A:HIS95 3.8 13.8 1.0
NE2 A:HIS145 4.0 11.3 1.0
CG A:MET150 4.0 9.4 1.0
DB3 A:MET62 4.1 10.5 1.0
CD2 A:HIS145 4.1 13.0 1.0
DD3 A:PRO138 4.1 12.8 1.0
NE2 A:HIS95 4.1 14.9 1.0
O A:LEU94 4.2 14.2 1.0
DG2 A:MET150 4.2 11.2 1.0
DB2 A:HIS145 4.2 11.8 1.0
DG2 A:PRO138 4.2 15.5 1.0
CD2 A:HIS95 4.2 12.7 1.0
CG A:PRO138 4.2 12.9 1.0
DB3 A:MET150 4.3 10.7 1.0
SD A:MET62 4.4 11.6 1.0
DE3 A:MET150 4.4 13.7 1.0
DB2 A:HIS95 4.5 15.0 1.0
DB2 A:MET150 4.5 10.7 1.0
CB A:MET150 4.6 8.9 1.0
N A:ASN96 4.6 11.6 1.0
DA A:HIS145 4.6 13.1 1.0
CA A:CYS136 4.7 12.2 1.0
CD A:PRO138 4.7 10.7 1.0
CA A:HIS145 4.8 11.0 1.0
N A:HIS95 4.8 11.4 1.0
C A:HIS95 4.8 12.0 1.0
DE2 A:HIS145 4.9 13.5 1.0
DB2 A:MET62 4.9 10.5 1.0
DG3 A:MET150 4.9 11.2 1.0
C A:LEU94 4.9 14.2 1.0
CB A:MET62 4.9 8.8 1.0
DA A:CYS136 5.0 14.6 1.0
O A:ASN96 5.0 8.1 1.0

Copper binding site 2 out of 2 in 6gtj

Go back to Copper Binding Sites List in 6gtj
Copper binding site 2 out of 2 in the Neutron Crystal Structure For Copper Nitrite Reductase From Achromobacter Cycloclastes at 1.8 A Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Neutron Crystal Structure For Copper Nitrite Reductase From Achromobacter Cycloclastes at 1.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:9.7
occ:1.00
O A:HOH673 1.7 12.5 1.0
NE2 A:HIS135 2.0 8.3 1.0
NE2 A:HIS100 2.0 7.4 1.0
D1 A:HOH673 2.3 15.0 1.0
D2 A:HOH673 2.4 15.0 1.0
CE1 A:HIS100 3.0 8.4 1.0
CE1 A:HIS135 3.0 9.1 1.0
CD2 A:HIS135 3.0 9.5 1.0
CD2 A:HIS100 3.0 10.0 1.0
DE1 A:HIS100 3.2 10.1 1.0
DE1 A:HIS135 3.2 10.9 1.0
DD2 A:HIS135 3.3 11.3 1.0
DD2 A:HIS100 3.3 12.0 1.0
OD2 A:ASP98 3.5 10.6 1.0
ND1 A:HIS135 4.1 10.8 1.0
ND1 A:HIS100 4.1 8.1 1.0
CG A:HIS135 4.1 8.4 1.0
CG A:HIS100 4.2 9.9 1.0
CG A:ASP98 4.4 10.2 1.0
D2 A:HOH669 4.4 12.8 1.0
DG11 A:VAL133 4.8 10.1 1.0
OD1 A:ASP98 4.8 9.1 1.0
DB3 A:ASP98 4.8 12.1 1.0
D1 A:HOH669 4.9 12.8 1.0
DD1 A:HIS135 5.0 12.9 1.0

Reference:

T.P.Halsted, K.Yamashita, C.C.Gopalasingam, R.T.Shenoy, K.Hirata, H.Ago, G.Ueno, M.P.Blakeley, R.R.Eady, S.V.Antonyuk, M.Yamamoto, S.S.Hasnain. Catalytically Important Damage-Free Structures of A Copper Nitrite Reductase Obtained By Femtosecond X-Ray Laser and Room-Temperature Neutron Crystallography. Iucrj V. 6 761 2019.
ISSN: ESSN 2052-2525
PubMed: 31316819
DOI: 10.1107/S2052252519008285
Page generated: Sun Dec 13 11:22:43 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy