Copper in PDB 6giq: Saccharomyces Cerevisiae Respiratory Supercomplex III2IV

All present enzymatic activity of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV:
1.10.2.2; 1.9.3.1;

The structure of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV also contains other interesting chemical elements:

Iron

(Fe)

12 atoms

The binding sites of Copper atom in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV (pdb code 6giq). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV, PDB code: 6giq:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV within 5.0Å range: probe atom residue distance (Å) B Occ a:Cu601 b:0.6 occ:1.00 NE2 a:HIS291 2.2 0.2 1.0 ND1 a:HIS241 2.4 0.1 1.0 CE1 a:HIS291 2.5 0.2 1.0 NE2 a:HIS290 2.7 0.5 1.0 CE1 a:HIS241 3.0 0.1 1.0 CD2 a:HIS291 3.4 0.2 1.0 CE1 a:HIS290 3.5 0.5 1.0 CG a:HIS241 3.7 0.1 1.0 ND1 a:HIS291 3.7 0.2 1.0 CD2 a:HIS290 3.8 0.5 1.0 FE a:HEA603 4.0 0.1 1.0 NA a:HEA603 4.0 0.1 1.0 ND a:HEA603 4.1 0.1 1.0 CG a:HIS291 4.2 0.2 1.0 C4D a:HEA603 4.2 0.1 1.0 C1A a:HEA603 4.2 0.1 1.0 CB a:HIS241 4.2 0.1 1.0 CHA a:HEA603 4.3 0.1 1.0 NE2 a:HIS241 4.3 0.1 1.0 CA a:HIS241 4.5 0.1 1.0 CG2 a:VAL244 4.5 0.1 1.0 NB a:HEA603 4.6 0.1 1.0 CD2 a:HIS241 4.6 0.1 1.0 NC a:HEA603 4.6 0.1 1.0 C4A a:HEA603 4.7 0.1 1.0 C1D a:HEA603 4.7 0.1 1.0 ND1 a:HIS290 4.7 0.5 1.0 CG a:HIS290 4.9 0.5 1.0 C3D a:HEA603 5.0 0.1 1.0 C2A a:HEA603 5.0 0.1 1.0

Copper binding site 2 out of 3 in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV within 5.0Å range: probe atom residue distance (Å) B Occ b:Cu301 b:0.8 occ:1.00 CU1 b:CUA301 0.0 0.8 1.0 CU2 b:CUA301 1.7 0.8 1.0 CG b:HIS186 3.0 0.2 1.0 SG b:CYS221 3.1 0.0 1.0 SG b:CYS225 3.1 0.3 1.0 SD b:MET232 3.1 0.1 1.0 CB b:CYS225 3.1 0.3 1.0 CB b:HIS186 3.2 0.2 1.0 ND1 b:HIS186 3.4 0.2 1.0 CD2 b:HIS186 3.4 0.2 1.0 O b:GLU223 3.6 0.3 1.0 ND1 b:HIS229 3.9 0.1 1.0 N b:CYS225 3.9 0.3 1.0 CE1 b:HIS186 3.9 0.2 1.0 NE2 b:HIS186 4.0 0.2 1.0 CE b:MET232 4.1 0.1 1.0 CA b:CYS225 4.1 0.3 1.0 CB b:CYS221 4.3 0.0 1.0 CG b:MET232 4.5 0.1 1.0 C b:LEU224 4.6 0.6 1.0 CA b:HIS229 4.6 0.1 1.0 CA b:HIS186 4.7 0.2 1.0 CE1 b:HIS229 4.7 0.1 1.0 CG b:HIS229 4.8 0.1 1.0 C b:GLU223 4.8 0.3 1.0 O b:VAL184 4.8 0.2 1.0 CB b:HIS229 4.9 0.1 1.0 O b:GLY228 4.9 0.4 1.0 CB b:MET232 4.9 0.1 1.0

Copper binding site 3 out of 3 in the Saccharomyces Cerevisiae Respiratory Supercomplex III2IV


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Saccharomyces Cerevisiae Respiratory Supercomplex III2IV within 5.0Å range: probe atom residue distance (Å) B Occ b:Cu301 b:0.8 occ:1.00 CU2 b:CUA301 0.0 0.8 1.0 CU1 b:CUA301 1.7 0.8 1.0 ND1 b:HIS229 2.8 0.1 1.0 SD b:MET232 3.1 0.1 1.0 SG b:CYS221 3.1 0.0 1.0 CA b:HIS229 3.2 0.1 1.0 SG b:CYS225 3.3 0.3 1.0 CG b:HIS229 3.6 0.1 1.0 O b:HIS229 3.6 0.1 1.0 CB b:HIS229 3.7 0.1 1.0 CB b:CYS221 3.7 0.0 1.0 CE1 b:HIS229 3.8 0.1 1.0 C b:HIS229 3.9 0.1 1.0 CG b:MET232 3.9 0.1 1.0 O b:GLY228 3.9 0.4 1.0 O b:GLU223 4.0 0.3 1.0 CB b:CYS225 4.0 0.3 1.0 CB b:MET232 4.0 0.1 1.0 N b:HIS229 4.2 0.1 1.0 N b:CYS225 4.2 0.3 1.0 C b:GLY228 4.4 0.4 1.0 CE b:MET232 4.4 0.1 1.0 CG b:HIS186 4.6 0.2 1.0 CB b:HIS186 4.6 0.2 1.0 CD2 b:HIS229 4.7 0.1 1.0 CA b:CYS225 4.8 0.3 1.0 NE2 b:HIS229 4.8 0.1 1.0 CD2 b:HIS186 4.8 0.2 1.0

S.Rathore, J.Berndtsson, L.Marin-Buera, J.Conrad, M.Carroni, P.Brzezinski, M.Ott. Cryo-Em Structure of the Yeast Respiratory Supercomplex. Nat. Struct. Mol. Biol. V. 26 50 2019.
ISSN: ESSN 1545-9985
PubMed: 30598556
DOI: 10.1038/S41594-018-0169-7