Copper in PDB 6dyd: Cu(II)-Bound Structure of the Engineered Cyt CB562 Variant, CH3

The structure of Cu(II)-Bound Structure of the Engineered Cyt CB562 Variant, CH3, PDB code: 6dyd was solved by F.A.Tezcan, J.Rittle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.28 / 1.72
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	32.569, 87.770, 37.460, 90.00, 95.56, 90.00
R / Rfree (%)	19.6 / 24.7

The structure of Cu(II)-Bound Structure of the Engineered Cyt CB562 Variant, CH3 also contains other interesting chemical elements:

Iron	(Fe)	2 atoms
Calcium	(Ca)	5 atoms

The binding sites of Copper atom in the Cu(II)-Bound Structure of the Engineered Cyt CB562 Variant, CH3 (pdb code 6dyd). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Cu(II)-Bound Structure of the Engineered Cyt CB562 Variant, CH3, PDB code: 6dyd:

Copper binding site 1 out of 1 in the Cu(II)-Bound Structure of the Engineered Cyt CB562 Variant, CH3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cu(II)-Bound Structure of the Engineered Cyt CB562 Variant, CH3 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu205 b:24.5 occ:1.00 NE2 C:HIS67 2.0 20.0 1.0 NE2 C:HIS71 2.1 15.9 1.0 NE2 A:HIS67 2.1 17.2 1.0 NE2 A:HIS71 2.2 19.7 1.0 NE2 A:HIS97 2.2 19.0 1.0 CD2 C:HIS67 2.9 22.1 1.0 CE1 A:HIS67 3.0 21.9 1.0 CE1 A:HIS97 3.0 15.9 1.0 CE1 C:HIS67 3.0 23.3 1.0 CE1 C:HIS71 3.1 19.1 1.0 CD2 C:HIS71 3.1 19.1 1.0 CD2 A:HIS71 3.1 17.0 1.0 CE1 A:HIS71 3.1 18.9 1.0 CD2 A:HIS67 3.2 18.1 1.0 CD2 A:HIS97 3.2 18.0 1.0 CG C:HIS67 4.1 16.0 1.0 O C:HOH357 4.1 29.0 1.0 ND1 C:HIS67 4.1 22.8 1.0 ND1 A:HIS97 4.1 18.8 1.0 ND1 A:HIS67 4.1 20.3 1.0 ND1 C:HIS71 4.2 17.9 1.0 CG C:HIS71 4.2 19.4 1.0 ND1 A:HIS71 4.2 19.8 1.0 CG A:HIS67 4.3 18.9 1.0 CG A:HIS71 4.3 16.6 1.0 CG A:HIS97 4.3 14.2 1.0 CE1 C:HIS97 4.7 18.4 1.0 NE2 C:HIS97 4.8 20.7 1.0

J.Rittle, M.J.Field, M.T.Green, F.A.Tezcan. An Efficient, Step-Economical Strategy For the Design of Functional Metalloproteins. Nat.Chem. V. 11 434 2019.
ISSN: ESSN 1755-4349
PubMed: 30778140
DOI: 10.1038/S41557-019-0218-9