Copper in PDB 5ztd: X-Ray Crystal Structure of Pseudoazurin MET16VAL Variant

The structure of X-Ray Crystal Structure of Pseudoazurin MET16VAL Variant, PDB code: 5ztd was solved by C.Sakai, T.Yamaguchi, T.Kohzuma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.21 / 1.05
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	35.070, 60.560, 54.530, 90.00, 106.20, 90.00
R / Rfree (%)	11.4 / 15.1

The binding sites of Copper atom in the X-Ray Crystal Structure of Pseudoazurin MET16VAL Variant (pdb code 5ztd). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the X-Ray Crystal Structure of Pseudoazurin MET16VAL Variant, PDB code: 5ztd:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the X-Ray Crystal Structure of Pseudoazurin MET16VAL Variant


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of X-Ray Crystal Structure of Pseudoazurin MET16VAL Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu201 b:4.7 occ:1.00 ND1 A:HIS40 2.0 5.2 1.0 ND1 A:HIS81 2.0 5.2 1.0 SG A:CYS78 2.2 5.6 1.0 SD A:MET86 2.5 4.9 1.0 HB2 A:HIS81 2.8 6.3 1.0 CE1 A:HIS40 2.9 5.1 1.0 CE1 A:HIS81 3.0 7.0 1.0 CG A:HIS81 3.1 5.2 1.0 HE1 A:HIS40 3.1 6.1 1.0 CG A:HIS40 3.1 4.0 1.0 HE1 A:HIS81 3.2 8.5 1.0 HB3 A:CYS78 3.2 5.1 1.0 HA A:HIS40 3.2 4.9 1.0 HB3 A:HIS40 3.2 5.3 1.0 CB A:CYS78 3.2 4.2 1.0 CE A:MET86 3.3 5.4 1.0 HE1 A:MET86 3.3 8.2 1.0 HB2 A:CYS78 3.3 5.1 1.0 HE3 A:MET86 3.3 8.2 1.0 CB A:HIS81 3.4 5.2 1.0 CB A:HIS40 3.5 4.4 1.0 HG2 A:PRO80 3.7 7.5 1.0 CG A:MET86 3.8 4.3 1.0 CA A:HIS40 3.8 4.1 1.0 HB3 A:HIS81 3.9 6.3 1.0 HG2 A:MET86 3.9 5.2 1.0 HB A:VAL16 4.0 5.5 1.0 HB3 A:MET86 4.0 4.5 1.0 H A:ASN41 4.1 5.3 1.0 NE2 A:HIS81 4.1 7.5 1.0 NE2 A:HIS40 4.1 5.3 1.0 CD2 A:HIS81 4.2 6.7 1.0 CD2 A:HIS40 4.2 4.4 1.0 HE2 A:MET86 4.2 8.2 1.0 HB2 A:MET86 4.2 4.5 1.0 H A:HIS81 4.2 5.9 1.0 CB A:MET86 4.3 3.7 1.0 O A:GLY39 4.4 6.8 1.0 HB2 A:HIS40 4.4 5.3 1.0 HD2 A:PRO80 4.6 6.5 1.0 CG A:PRO80 4.6 6.3 1.0 CA A:CYS78 4.6 4.4 1.0 HG3 A:MET86 4.6 5.2 1.0 N A:HIS81 4.6 4.9 1.0 CA A:HIS81 4.6 4.5 1.0 HG11 A:VAL16 4.6 8.4 1.0 N A:HIS40 4.6 4.5 1.0 HG13 A:VAL16 4.8 8.4 1.0 N A:ASN41 4.8 4.5 1.0 C A:GLY39 4.8 5.6 1.0 CB A:VAL16 4.9 4.6 1.0 HG3 A:PRO80 4.9 7.5 1.0 C A:HIS40 4.9 4.2 1.0 HA A:CYS78 5.0 5.3 1.0 CG1 A:VAL16 5.0 5.6 1.0

Copper binding site 2 out of 2 in the X-Ray Crystal Structure of Pseudoazurin MET16VAL Variant


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of X-Ray Crystal Structure of Pseudoazurin MET16VAL Variant within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu201 b:6.3 occ:1.00 ND1 B:HIS40 2.0 6.4 1.0 ND1 B:HIS81 2.0 6.6 1.0 SG B:CYS78 2.2 6.3 1.0 SD B:MET86 2.5 6.1 1.0 HB2 B:HIS81 2.8 7.8 1.0 CE1 B:HIS40 3.0 7.3 1.0 CE1 B:HIS81 3.0 8.4 1.0 CG B:HIS81 3.1 6.8 1.0 CG B:HIS40 3.1 6.1 1.0 HB3 B:CYS78 3.1 6.2 1.0 HE1 B:HIS40 3.1 8.8 1.0 CB B:CYS78 3.1 5.2 1.0 HA B:HIS40 3.2 7.2 1.0 HE1 B:HIS81 3.2 10.0 1.0 HB3 B:HIS40 3.2 7.7 1.0 HE1 B:MET86 3.2 12.4 1.0 CE B:MET86 3.3 8.3 1.0 HB2 B:CYS78 3.3 6.2 1.0 CB B:HIS81 3.4 6.5 1.0 HE2 B:MET86 3.4 12.4 1.0 CB B:HIS40 3.5 6.4 1.0 HG2 B:PRO80 3.6 8.4 1.0 CA B:HIS40 3.8 6.0 1.0 CG B:MET86 3.9 5.6 1.0 HB3 B:HIS81 3.9 7.8 1.0 HG2 B:MET86 4.0 6.7 1.0 HB B:VAL16 4.0 7.7 1.0 O B:GLY39 4.1 10.4 1.0 NE2 B:HIS40 4.1 6.5 1.0 NE2 B:HIS81 4.1 9.3 1.0 H B:ASN41 4.2 7.2 1.0 HB3 B:MET86 4.2 6.5 1.0 CD2 B:HIS81 4.2 8.4 1.0 CD2 B:HIS40 4.2 7.0 1.0 H B:HIS81 4.2 7.4 1.0 HE3 B:MET86 4.2 12.4 1.0 HB2 B:MET86 4.3 6.5 1.0 CB B:MET86 4.4 5.4 1.0 HB2 B:HIS40 4.4 7.7 1.0 HG11 B:VAL16 4.4 11.7 1.0 CG B:PRO80 4.5 7.0 1.0 CA B:CYS78 4.6 5.3 1.0 HB3 B:MET7 4.6 7.4 0.6 N B:HIS81 4.6 6.2 1.0 CA B:HIS81 4.6 6.4 1.0 N B:HIS40 4.6 6.4 1.0 HD2 B:PRO80 4.6 7.9 1.0 HG3 B:MET86 4.7 6.7 1.0 C B:GLY39 4.7 7.3 1.0 HG13 B:VAL16 4.7 11.7 1.0 N B:ASN41 4.8 6.0 1.0 HG3 B:PRO80 4.8 8.4 1.0 CB B:VAL16 4.9 6.4 1.0 CG1 B:VAL16 4.9 7.8 1.0 C B:HIS40 4.9 6.2 1.0 HB3 B:MET7 4.9 10.7 0.4 HA B:CYS78 4.9 6.3 1.0

C.Sakai, T.Yamaguchi, T.Kohzuma. X-Ray Crystal Structure of Pseudoazurin MET16VAL Variant To Be Published.