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Copper in PDB 5zou: Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1)

Enzymatic activity of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1)

All present enzymatic activity of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1):
1.4.3.21;

Protein crystallography data

The structure of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1), PDB code: 5zou was solved by T.Murakawa, S.Baba, Y.Kawano, H.Hayashi, T.Yano, K.Tanizawa, T.Kumasaka, M.Yamamoto, T.Okajima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.35 / 1.68
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 193.440, 64.244, 158.805, 90.00, 117.12, 90.00
R / Rfree (%) 15.4 / 17.2

Other elements in 5zou:

The structure of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1) also contains other interesting chemical elements:

Sodium (Na) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1) (pdb code 5zou). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1), PDB code: 5zou:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 5zou

Go back to Copper Binding Sites List in 5zou
Copper binding site 1 out of 2 in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1001

b:19.1
occ:1.00
NE2 A:HIS431 2.0 13.9 1.0
O A:HOH1166 2.0 30.2 0.8
O A:HOH1277 2.0 23.0 0.4
NE2 A:HIS433 2.0 12.9 1.0
ND1 A:HIS592 2.1 19.1 1.0
OH A:TYQ382 2.6 24.5 0.7
CE1 A:HIS431 2.9 14.4 1.0
CD2 A:HIS431 3.0 13.1 1.0
CE1 A:HIS592 3.0 20.6 1.0
CE1 A:HIS433 3.0 16.6 1.0
CD2 A:HIS433 3.0 16.9 1.0
CG A:HIS592 3.1 16.4 1.0
CZ A:TYQ382 3.4 30.6 0.7
CB A:HIS592 3.4 14.6 1.0
O A:HOH1478 3.6 47.7 1.0
N5 A:TYQ382 4.0 48.2 0.7
CE2 A:TYQ382 4.0 37.2 0.7
ND1 A:HIS431 4.0 15.1 1.0
CG A:HIS431 4.1 15.2 1.0
ND1 A:HIS433 4.1 14.9 1.0
OZ A:TYQ382 4.1 35.9 0.3
NE2 A:HIS592 4.1 16.1 1.0
CG A:HIS433 4.2 12.7 1.0
CD2 A:HIS592 4.2 14.5 1.0
CE1 A:TYQ382 4.2 36.4 0.7
O A:HOH1104 4.3 19.7 1.0
SD A:MET602 4.9 28.6 1.0
CA A:HIS592 5.0 12.3 1.0

Copper binding site 2 out of 2 in 5zou

Go back to Copper Binding Sites List in 5zou
Copper binding site 2 out of 2 in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu701

b:18.3
occ:1.00
O B:HOH1256 2.0 24.5 0.3
CE1 B:HIS431 2.0 10.0 1.0
CD2 B:HIS592 2.0 12.0 1.0
NE2 B:HIS433 2.1 13.4 1.0
O B:HOH996 2.1 27.5 0.7
OH B:TYQ382 2.6 24.1 0.8
NE2 B:HIS431 2.8 15.5 1.0
CG B:HIS592 3.0 14.9 1.0
CE1 B:HIS433 3.0 15.7 1.0
CD2 B:HIS433 3.1 15.6 1.0
ND1 B:HIS431 3.1 16.5 1.0
NE2 B:HIS592 3.1 25.2 1.0
CZ B:TYQ382 3.4 28.8 0.8
CB B:HIS592 3.4 16.7 1.0
O B:HOH1305 3.6 43.4 1.0
N5 B:TYQ382 3.9 51.8 0.8
CE2 B:TYQ382 4.0 39.4 0.8
CD2 B:HIS431 4.0 10.5 1.0
ND1 B:HIS433 4.1 14.7 1.0
ND1 B:HIS592 4.2 20.4 1.0
CG B:HIS431 4.2 12.4 1.0
CG B:HIS433 4.2 12.6 1.0
CE1 B:HIS592 4.2 13.5 1.0
OZ B:TYQ382 4.2 31.2 0.2
CE1 B:TYQ382 4.2 29.9 0.8
O B:HOH816 4.3 16.1 1.0
CE B:MET602 4.6 45.5 1.0
CA B:HIS592 4.9 12.7 1.0
SD B:MET602 5.0 29.2 1.0

Reference:

T.Murakawa, S.Baba, Y.Kawano, H.Hayashi, T.Yano, T.Kumasaka, M.Yamamoto, K.Tanizawa, T.Okajima. In Crystallothermodynamic Analysis of Conformational Change of the Topaquinone Cofactor in Bacterial Copper Amine Oxidase Proc. Natl. Acad. Sci. V. 116 135 2019U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30563857
DOI: 10.1073/PNAS.1811837116
Page generated: Wed Jul 31 05:39:04 2024

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