Copper in PDB 5zlj: Crystal Structure of Cota Native Enzyme, PH8.0

The structure of Crystal Structure of Cota Native Enzyme, PH8.0, PDB code: 5zlj was solved by T.Xie, Z.C.Liu, G.G.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.97 / 1.96
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	101.897, 101.897, 136.162, 90.00, 90.00, 120.00
R / Rfree (%)	15.4 / 18.4

The binding sites of Copper atom in the Crystal Structure of Cota Native Enzyme, PH8.0 (pdb code 5zlj). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Crystal Structure of Cota Native Enzyme, PH8.0, PDB code: 5zlj:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in the Crystal Structure of Cota Native Enzyme, PH8.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Cota Native Enzyme, PH8.0 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu601 b:21.5 occ:1.00 ND1 A:HIS497 2.1 17.9 1.0 ND1 A:HIS419 2.1 21.6 1.0 SG A:CYS492 2.2 18.4 1.0 CE1 A:HIS419 3.0 20.6 1.0 CE1 A:HIS497 3.1 18.2 1.0 CG A:HIS497 3.1 17.7 1.0 SD A:MET502 3.2 20.0 1.0 CG A:HIS419 3.2 19.7 1.0 CB A:CYS492 3.2 17.4 1.0 CB A:HIS497 3.4 17.2 1.0 CB A:HIS419 3.6 19.2 1.0 CE A:MET502 3.9 24.1 1.0 CD1 A:ILE494 4.0 17.0 1.0 NE2 A:HIS419 4.1 20.9 1.0 CB A:ILE494 4.2 16.3 1.0 CA A:HIS419 4.2 18.9 1.0 NE2 A:HIS497 4.2 17.2 1.0 CD2 A:HIS497 4.2 17.3 1.0 CD2 A:HIS419 4.3 22.4 1.0 CG1 A:ILE494 4.4 15.8 1.0 CA A:CYS492 4.6 16.8 1.0 O A:HOH905 4.6 29.6 1.0 CG A:MET502 4.6 19.4 1.0 CD A:PRO420 4.7 17.1 1.0 N A:ILE494 4.9 15.6 1.0 CA A:HIS497 4.9 18.2 1.0 O A:THR418 5.0 19.3 1.0 CG2 A:ILE494 5.0 15.9 1.0

Copper binding site 2 out of 4 in the Crystal Structure of Cota Native Enzyme, PH8.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Cota Native Enzyme, PH8.0 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu602 b:17.5 occ:0.21 NE2 A:HIS422 1.7 17.8 1.0 NE2 A:HIS105 1.8 16.9 1.0 O A:HOH924 2.6 16.6 1.0 CE1 A:HIS105 2.7 15.7 1.0 CE1 A:HIS422 2.7 16.7 1.0 CD2 A:HIS422 2.8 17.0 1.0 CD2 A:HIS105 2.9 15.2 1.0 CD2 A:HIS424 3.3 14.8 1.0 NE2 A:HIS424 3.3 16.4 1.0 O A:HOH1086 3.6 26.0 1.0 ND1 A:HIS107 3.6 17.1 1.0 CG A:HIS424 3.7 15.2 1.0 CG A:HIS107 3.7 15.3 1.0 CA A:HIS107 3.8 14.0 1.0 CE1 A:HIS424 3.8 15.8 1.0 ND1 A:HIS422 3.8 17.0 1.0 ND1 A:HIS105 3.8 15.6 1.0 CU A:CU603 3.9 18.6 0.4 CG A:HIS422 3.9 15.4 1.0 ND1 A:HIS424 3.9 15.6 1.0 CG A:HIS105 4.0 14.4 1.0 CE1 A:HIS107 4.0 15.7 1.0 N A:GLY108 4.0 13.7 1.0 CD2 A:HIS107 4.1 16.5 1.0 CB A:HIS107 4.1 14.3 1.0 NE2 A:HIS107 4.2 18.1 1.0 CU A:CU604 4.3 16.8 0.6 CA A:HIS424 4.3 14.6 1.0 C A:HIS107 4.4 13.9 1.0 CB A:HIS424 4.5 15.0 1.0 O A:HOH742 4.5 15.9 1.0 N A:HIS107 4.7 13.6 1.0 O A:LEU106 4.7 13.8 1.0 O A:LEU423 4.8 14.5 1.0 O A:HOH984 4.8 20.5 1.0 N A:HIS424 4.8 15.0 1.0

Copper binding site 3 out of 4 in the Crystal Structure of Cota Native Enzyme, PH8.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Cota Native Enzyme, PH8.0 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu603 b:18.6 occ:0.41 NE2 A:HIS491 2.0 17.9 1.0 NE2 A:HIS424 2.0 16.4 1.0 O A:HOH1086 2.1 26.0 1.0 NE2 A:HIS155 2.1 19.8 1.0 CE1 A:HIS424 2.9 15.8 1.0 CD2 A:HIS491 2.9 18.1 1.0 CE1 A:HIS491 2.9 17.8 1.0 CD2 A:HIS155 3.0 20.6 1.0 CD2 A:HIS424 3.1 14.8 1.0 CE1 A:HIS155 3.2 20.8 1.0 CD2 A:HIS422 3.5 17.0 1.0 O A:HOH927 3.8 36.7 1.0 CU A:CU602 3.9 17.5 0.2 CD2 A:HIS105 3.9 15.2 1.0 ND1 A:HIS491 4.0 17.6 1.0 NE2 A:HIS105 4.0 16.9 1.0 CG A:HIS491 4.0 17.4 1.0 ND1 A:HIS424 4.0 15.6 1.0 NE2 A:HIS422 4.1 17.8 1.0 CG2 A:VAL489 4.2 14.9 0.5 CG A:HIS424 4.2 15.2 1.0 CG A:HIS155 4.2 18.1 1.0 ND1 A:HIS155 4.2 21.6 1.0 CU A:CU604 4.5 16.8 0.6 CG A:HIS105 4.6 14.4 1.0 CG A:HIS422 4.7 15.4 1.0 CE1 A:HIS105 4.7 15.7 1.0 CD2 A:HIS493 4.7 18.2 1.0 O A:HOH929 4.7 25.2 1.0 OE2 A:GLU498 4.8 19.7 1.0 NE2 A:HIS493 4.8 17.5 1.0 CG1 A:VAL489 5.0 15.0 0.5

Copper binding site 4 out of 4 in the Crystal Structure of Cota Native Enzyme, PH8.0


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Cota Native Enzyme, PH8.0 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu604 b:16.8 occ:0.57 ND1 A:HIS107 1.9 17.1 1.0 NE2 A:HIS153 2.1 18.3 1.0 NE2 A:HIS493 2.3 17.5 1.0 O A:HOH1086 2.5 26.0 1.0 CE1 A:HIS107 2.8 15.7 1.0 CG A:HIS107 3.0 15.3 1.0 CE1 A:HIS153 3.0 17.3 1.0 CD2 A:HIS153 3.1 15.8 1.0 CD2 A:HIS493 3.2 18.2 1.0 CE1 A:HIS493 3.2 17.1 1.0 CB A:HIS107 3.4 14.3 1.0 CD2 A:HIS105 3.8 15.2 1.0 CZ2 A:TRP151 3.9 13.8 1.0 NE2 A:HIS107 4.0 18.1 1.0 CD2 A:HIS107 4.1 16.5 1.0 ND1 A:HIS153 4.1 15.8 1.0 O A:HOH927 4.1 36.7 1.0 CE2 A:TRP151 4.2 13.4 1.0 CG A:HIS153 4.2 15.0 1.0 NE1 A:TRP151 4.2 14.5 1.0 CU A:CU602 4.3 17.5 0.2 ND1 A:HIS493 4.3 17.1 1.0 CG A:HIS493 4.3 16.8 1.0 NE2 A:HIS105 4.3 16.9 1.0 CD2 A:HIS422 4.4 17.0 1.0 CB A:ALA297 4.4 13.8 1.0 NE2 A:HIS422 4.4 17.8 1.0 CU A:CU603 4.5 18.6 0.4 CA A:HIS107 4.6 14.0 1.0 CH2 A:TRP151 4.6 14.2 1.0

T.Xie, Z.Liu, G.Wang. Structural Insight Into the Allosteric Coupling of CU1 Site and Trinuclear Cu Cluster in Cota Laccase Chembiochem 2018.
ISSN: ESSN 1439-7633
PubMed: 29722464
DOI: 10.1002/CBIC.201800236