Copper »
PDB 5z86-5zpo »
5z86 »
Copper in PDB 5z86: Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days
Enzymatic activity of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days
All present enzymatic activity of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days:
1.9.3.1;
1.9.3.1;
Protein crystallography data
The structure of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days, PDB code: 5z86
was solved by
A.Shimada,
K.Hatano,
H.Tadehara,
T.Tsukihara,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 40.00 / 1.85 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 183.490, 206.292, 177.617, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 18.1 / 19.6 |
Other elements in 5z86:
The structure of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days also contains other interesting chemical elements:
| Magnesium | (Mg) | 2 atoms |
| Zinc | (Zn) | 2 atoms |
| Iron | (Fe) | 6 atoms |
| Sodium | (Na) | 2 atoms |
Copper Binding Sites:
The binding sites of Copper atom in the Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days
(pdb code 5z86). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days, PDB code: 5z86:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Copper where determined in the Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days, PDB code: 5z86:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;
Copper binding site 1 out of 6 in 5z86
Go back to
Copper Binding Sites List in 5z86
Copper binding site 1 out
of 6 in the Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days within 5.0Å range:
|
Copper binding site 2 out of 6 in 5z86
Go back to
Copper Binding Sites List in 5z86
Copper binding site 2 out
of 6 in the Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days within 5.0Å range:
|
Copper binding site 3 out of 6 in 5z86
Go back to
Copper Binding Sites List in 5z86
Copper binding site 3 out
of 6 in the Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days within 5.0Å range:
|
Copper binding site 4 out of 6 in 5z86
Go back to
Copper Binding Sites List in 5z86
Copper binding site 4 out
of 6 in the Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days within 5.0Å range:
|
Copper binding site 5 out of 6 in 5z86
Go back to
Copper Binding Sites List in 5z86
Copper binding site 5 out
of 6 in the Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days within 5.0Å range:
|
Copper binding site 6 out of 6 in 5z86
Go back to
Copper Binding Sites List in 5z86
Copper binding site 6 out
of 6 in the Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 20 Mm Azide Solution For 3 Days within 5.0Å range:
|
Reference:
A.Shimada,
K.Hatano,
H.Tadehara,
N.Yano,
K.Shinzawa-Itoh,
E.Yamashita,
K.Muramoto,
T.Tsukihara,
S.Yoshikawa.
X-Ray Structural Analyses of Azide-Bound Cytochromecoxidases Reveal That the H-Pathway Is Critically Important For the Proton-Pumping Activity. J. Biol. Chem. V. 293 14868 2018.
ISSN: ESSN 1083-351X
PubMed: 30077971
DOI: 10.1074/JBC.RA118.003123
Page generated: Wed Jul 31 05:36:36 2024
ISSN: ESSN 1083-351X
PubMed: 30077971
DOI: 10.1074/JBC.RA118.003123
Last articles
Zn in 9J0NZn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
