Copper in PDB 5z0x: X-Ray Crystal Structure of Pseudoazurin MET16TYR Variant

The structure of X-Ray Crystal Structure of Pseudoazurin MET16TYR Variant, PDB code: 5z0x was solved by Y.Saito, T.Yamaguchi, T.Kohzuma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.46
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	34.540, 59.030, 54.000, 90.00, 105.56, 90.00
R / Rfree (%)	14.6 / 19.1

The binding sites of Copper atom in the X-Ray Crystal Structure of Pseudoazurin MET16TYR Variant (pdb code 5z0x). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the X-Ray Crystal Structure of Pseudoazurin MET16TYR Variant, PDB code: 5z0x:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the X-Ray Crystal Structure of Pseudoazurin MET16TYR Variant


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of X-Ray Crystal Structure of Pseudoazurin MET16TYR Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu201 b:11.2 occ:1.00 ND1 A:HIS40 2.1 9.2 1.0 ND1 A:HIS81 2.1 10.5 1.0 SG A:CYS78 2.2 10.0 1.0 SD A:MET86 2.6 9.2 1.0 CE1 A:HIS40 3.0 10.9 1.0 CE1 A:HIS81 3.1 11.0 1.0 CG A:HIS40 3.1 10.0 1.0 CG A:HIS81 3.1 11.5 1.0 CB A:CYS78 3.2 8.3 1.0 CB A:HIS81 3.4 11.2 1.0 CE A:MET86 3.4 8.9 1.0 CB A:HIS40 3.4 10.4 1.0 CA A:HIS40 3.7 10.6 1.0 CG A:MET86 3.8 8.5 1.0 N A:HIS81 4.0 10.8 1.0 NE2 A:HIS40 4.2 9.7 1.0 NE2 A:HIS81 4.2 12.9 1.0 CD2 A:HIS40 4.2 9.5 1.0 CD2 A:HIS81 4.2 12.3 1.0 O A:GLY39 4.3 14.6 1.0 CA A:HIS81 4.3 11.4 1.0 CB A:MET86 4.3 8.4 1.0 CB A:PRO80 4.4 12.4 1.0 N A:HIS40 4.5 10.2 1.0 CA A:CYS78 4.6 8.8 1.0 C A:GLY39 4.7 11.1 1.0 N A:ASN41 4.8 10.6 1.0 CD1 A:TYR16 4.8 11.5 1.0 C A:PRO80 4.9 12.9 1.0 C A:HIS40 4.9 10.9 1.0

Copper binding site 2 out of 2 in the X-Ray Crystal Structure of Pseudoazurin MET16TYR Variant


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of X-Ray Crystal Structure of Pseudoazurin MET16TYR Variant within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu201 b:11.7 occ:1.00 ND1 B:HIS40 2.0 11.4 1.0 ND1 B:HIS81 2.1 11.3 1.0 SG B:CYS78 2.2 10.0 1.0 SD B:MET86 2.8 10.8 1.0 CE1 B:HIS40 2.9 13.3 1.0 CG B:HIS40 3.0 11.3 1.0 CE1 B:HIS81 3.1 11.9 1.0 CG B:HIS81 3.1 10.1 1.0 CB B:CYS78 3.2 8.8 1.0 CB B:HIS81 3.4 9.7 1.0 CB B:HIS40 3.4 10.6 1.0 CE B:MET86 3.5 11.9 1.0 CA B:HIS40 3.6 11.0 1.0 O B:GLY39 4.0 13.5 1.0 NE2 B:HIS40 4.1 11.8 1.0 CD2 B:HIS40 4.1 11.9 1.0 NE2 B:HIS81 4.2 13.1 1.0 CD2 B:HIS81 4.2 11.0 1.0 CG B:MET86 4.3 9.4 1.0 N B:HIS81 4.3 8.5 1.0 CG B:PRO80 4.4 9.4 1.0 N B:HIS40 4.4 10.7 1.0 C B:GLY39 4.5 11.6 1.0 CA B:HIS81 4.5 8.7 1.0 CA B:CYS78 4.6 8.5 1.0 N B:ASN41 4.7 9.4 1.0 CB B:MET86 4.7 9.2 1.0 C B:HIS40 4.8 9.7 1.0 CD1 B:TYR16 4.8 17.8 1.0 CD B:PRO80 4.9 8.5 1.0

T.Yamaguchi, Y.Saito, T.Kohzuma. X-Ray Crystal Structure of Pseudoazurin MET16TYR Variant To Be Published.