Copper in PDB 5ysg: X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, Reduced Form.

The structure of X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, Reduced Form., PDB code: 5ysg was solved by A.Kohei, T.Yamaguchi, T.Kohzuma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.92 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	91.530, 91.490, 78.570, 90.00, 90.04, 90.00
R / Rfree (%)	17.2 / 20.3

The binding sites of Copper atom in the X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, Reduced Form. (pdb code 5ysg). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, Reduced Form., PDB code: 5ysg:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in the X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, Reduced Form.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, Reduced Form. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu201 b:31.0 occ:1.00 ND1 A:HIS40 2.1 24.6 1.0 SG A:CYS78 2.2 26.1 1.0 ND1 A:HIS81 2.4 31.9 1.0 SD A:MET86 2.7 27.3 1.0 CE1 A:HIS40 3.0 24.0 1.0 CB A:CYS78 3.1 22.8 1.0 CG A:HIS40 3.1 21.4 1.0 CG A:HIS81 3.3 31.3 1.0 CE1 A:HIS81 3.4 29.1 1.0 CE A:MET86 3.5 36.0 1.0 CB A:HIS40 3.5 22.6 1.0 CB A:HIS81 3.6 26.6 1.0 CA A:HIS40 3.6 22.3 1.0 O A:GLY39 3.8 29.9 1.0 NE2 A:HIS40 4.1 24.8 1.0 CG A:MET86 4.2 27.4 1.0 CD2 A:HIS40 4.2 25.1 1.0 N A:HIS40 4.4 25.6 1.0 C A:GLY39 4.4 25.8 1.0 NE2 A:HIS81 4.5 30.6 1.0 CD2 A:HIS81 4.5 30.4 1.0 CA A:CYS78 4.5 21.6 1.0 N A:HIS81 4.5 26.3 1.0 CG A:PRO80 4.5 26.4 1.0 N A:ASN41 4.7 20.8 1.0 CA A:HIS81 4.7 24.9 1.0 CB A:MET86 4.7 27.0 1.0 C A:HIS40 4.7 20.8 1.0 N A:GLY16 5.0 47.5 1.0 C A:CYS78 5.0 22.5 1.0

Copper binding site 2 out of 4 in the X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, Reduced Form.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, Reduced Form. within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu201 b:31.2 occ:1.00 ND1 B:HIS40 2.1 24.7 1.0 SG B:CYS78 2.1 26.3 1.0 ND1 B:HIS81 2.4 33.1 1.0 SD B:MET86 2.7 26.3 1.0 CE1 B:HIS40 3.0 23.2 1.0 CB B:CYS78 3.1 22.0 1.0 CG B:HIS40 3.2 22.9 1.0 CE1 B:HIS81 3.3 31.1 1.0 CG B:HIS81 3.3 31.4 1.0 CE B:MET86 3.4 31.0 1.0 CB B:HIS40 3.5 24.1 1.0 CA B:HIS40 3.6 23.7 1.0 CB B:HIS81 3.6 28.6 1.0 O B:GLY39 3.9 27.9 1.0 NE2 B:HIS40 4.1 24.9 1.0 CG B:MET86 4.2 26.4 1.0 CD2 B:HIS40 4.2 23.8 1.0 N B:HIS40 4.4 25.7 1.0 NE2 B:HIS81 4.4 30.9 1.0 C B:GLY39 4.5 28.8 1.0 CA B:CYS78 4.5 21.9 1.0 CD2 B:HIS81 4.5 31.6 1.0 N B:HIS81 4.5 27.7 1.0 CG B:PRO80 4.6 27.6 1.0 N B:ASN41 4.6 20.2 1.0 C B:HIS40 4.7 19.7 1.0 CB B:MET86 4.7 25.7 1.0 CA B:HIS81 4.7 24.5 1.0 C B:CYS78 4.9 21.2 1.0

Copper binding site 3 out of 4 in the X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, Reduced Form.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, Reduced Form. within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu201 b:30.4 occ:1.00 ND1 C:HIS40 2.1 26.4 1.0 SG C:CYS78 2.2 27.2 1.0 ND1 C:HIS81 2.4 31.7 1.0 SD C:MET86 2.7 26.2 1.0 CE1 C:HIS40 3.0 24.4 1.0 CB C:CYS78 3.1 24.7 1.0 CG C:HIS40 3.1 23.4 1.0 CE1 C:HIS81 3.3 30.7 1.0 CE C:MET86 3.3 33.3 1.0 CG C:HIS81 3.4 31.2 1.0 CB C:HIS40 3.5 25.1 1.0 CA C:HIS40 3.5 24.4 1.0 CB C:HIS81 3.6 26.9 1.0 O C:GLY39 3.8 28.0 1.0 CG C:MET86 4.2 28.7 1.0 NE2 C:HIS40 4.2 25.3 1.0 CD2 C:HIS40 4.2 24.6 1.0 N C:HIS40 4.4 27.2 1.0 C C:GLY39 4.4 27.2 1.0 NE2 C:HIS81 4.5 27.7 1.0 CD2 C:HIS81 4.5 31.3 1.0 CA C:CYS78 4.5 22.7 1.0 N C:HIS81 4.6 25.8 1.0 N C:ASN41 4.6 22.9 1.0 CG C:PRO80 4.7 26.8 1.0 C C:HIS40 4.7 21.9 1.0 CB C:MET86 4.7 28.9 1.0 CA C:HIS81 4.7 24.8 1.0 C C:CYS78 5.0 22.1 1.0

Copper binding site 4 out of 4 in the X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, Reduced Form.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, Reduced Form. within 5.0Å range: probe atom residue distance (Å) B Occ D:Cu201 b:31.4 occ:1.00 ND1 D:HIS40 2.1 26.8 1.0 SG D:CYS78 2.2 25.5 1.0 ND1 D:HIS81 2.3 32.0 1.0 SD D:MET86 2.7 26.5 1.0 CE1 D:HIS40 3.0 23.1 1.0 CB D:CYS78 3.1 23.0 1.0 CG D:HIS40 3.2 21.6 1.0 CE1 D:HIS81 3.3 31.9 1.0 CG D:HIS81 3.3 30.0 1.0 CE D:MET86 3.4 32.1 1.0 CB D:HIS40 3.6 25.6 1.0 CB D:HIS81 3.6 27.1 1.0 CA D:HIS40 3.6 24.5 1.0 O D:GLY39 3.9 26.5 1.0 CG D:MET86 4.1 26.3 1.0 NE2 D:HIS40 4.1 24.3 1.0 CD2 D:HIS40 4.3 24.1 1.0 NE2 D:HIS81 4.4 30.5 1.0 N D:HIS40 4.5 26.7 1.0 CD2 D:HIS81 4.5 32.7 1.0 CA D:CYS78 4.5 21.3 1.0 C D:GLY39 4.5 29.1 1.0 N D:HIS81 4.6 24.9 1.0 CG D:PRO80 4.6 25.9 1.0 N D:ASN41 4.7 22.2 1.0 CB D:MET86 4.7 26.1 1.0 CA D:HIS81 4.7 24.3 1.0 C D:HIS40 4.8 21.7 1.0 N D:GLY16 4.9 46.7 1.0 C D:CYS78 5.0 22.7 1.0

A.Kohei, T.Yamaguchi, T.Kohzuma. X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, Reduced Form. To Be Published.