Copper in PDB 5y4c: Crystal Structure of Efeo-Like Protein ALGP7 in Complex with A Metal Ion

The structure of Crystal Structure of Efeo-Like Protein ALGP7 in Complex with A Metal Ion, PDB code: 5y4c was solved by K.Temtrirath, Y.Maruyama, B.Mikami, K.Murata, W.Hashimoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.55 / 2.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	80.626, 56.638, 71.173, 90.00, 122.61, 90.00
R / Rfree (%)	20.3 / 27.6

The binding sites of Copper atom in the Crystal Structure of Efeo-Like Protein ALGP7 in Complex with A Metal Ion (pdb code 5y4c). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of Efeo-Like Protein ALGP7 in Complex with A Metal Ion, PDB code: 5y4c:

Copper binding site 1 out of 1 in the Crystal Structure of Efeo-Like Protein ALGP7 in Complex with A Metal Ion


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Efeo-Like Protein ALGP7 in Complex with A Metal Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu302 b:51.3 occ:1.00 OD2 A:ASP96 1.8 47.5 1.0 OE1 A:GLU82 1.9 49.2 1.0 OE2 A:GLU79 2.0 41.4 1.0 OE2 A:GLU178 2.2 48.9 1.0 OE1 A:GLU79 2.7 43.1 1.0 CD A:GLU79 2.7 44.0 1.0 CG A:ASP96 2.8 46.9 1.0 CD A:GLU82 2.9 47.9 1.0 O3 A:GOL301 3.0 58.8 1.0 CD A:GLU178 3.3 47.5 1.0 OD1 A:ASP96 3.3 48.0 1.0 OE2 A:GLU82 3.4 48.2 1.0 OE1 A:GLU178 3.7 53.3 1.0 NH2 A:ARG75 3.8 44.6 1.0 C3 A:GOL301 4.0 59.1 1.0 NZ A:LYS173 4.0 43.9 1.0 CB A:ASP96 4.1 50.4 1.0 CG A:GLU79 4.2 41.2 1.0 CG A:GLU82 4.2 41.2 1.0 O2 A:GOL301 4.2 46.4 1.0 NH1 A:ARG98 4.2 52.6 1.0 C2 A:GOL301 4.3 51.3 1.0 CE2 A:TYR78 4.3 37.0 1.0 CD2 A:TYR78 4.4 37.6 1.0 CG A:GLU178 4.5 50.2 1.0 CE A:LYS173 4.6 51.7 1.0 CZ A:ARG75 4.8 43.0 1.0 NE2 A:HIS115 4.8 52.9 1.0 NH1 A:ARG75 4.9 43.9 1.0

K.Temtrirath, K.Okumura, Y.Maruyama, B.Mikami, K.Murata, W.Hashimoto. Binding Mode of Metal Ions to the Bacterial Iron Import Protein Efeo Biochem. Biophys. Res. V. 493 1095 2017COMMUN..
ISSN: ESSN 1090-2104
PubMed: 28919419
DOI: 10.1016/J.BBRC.2017.09.057