Atomistry » Copper » PDB 5ogg-5weh » 5vkx
Atomistry »
  Copper »
    PDB 5ogg-5weh »
      5vkx »

Copper in PDB 5vkx: Coordination Chemistry Within A Protein Host: Regulation of the Secondary Coordination Sphere

Protein crystallography data

The structure of Coordination Chemistry Within A Protein Host: Regulation of the Secondary Coordination Sphere, PDB code: 5vkx was solved by S.I.Mann, T.Heinisch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.40 / 1.37
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 57.875, 57.875, 184.424, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 18.7

Copper Binding Sites:

The binding sites of Copper atom in the Coordination Chemistry Within A Protein Host: Regulation of the Secondary Coordination Sphere (pdb code 5vkx). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Coordination Chemistry Within A Protein Host: Regulation of the Secondary Coordination Sphere, PDB code: 5vkx:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 5vkx

Go back to Copper Binding Sites List in 5vkx
Copper binding site 1 out of 2 in the Coordination Chemistry Within A Protein Host: Regulation of the Secondary Coordination Sphere


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Coordination Chemistry Within A Protein Host: Regulation of the Secondary Coordination Sphere within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:32.4
occ:1.00
CU1 A:S18201 0.0 32.4 1.0
N7 A:S18201 2.0 37.1 1.0
N6 A:S18201 2.0 35.0 1.0
N4 A:S18201 2.1 24.2 1.0
N5 A:S18201 2.1 40.2 1.0
C20 A:S18201 2.8 28.8 1.0
C23 A:S18201 2.8 40.6 1.0
C22 A:S18201 2.9 31.7 1.0
N8 A:S18201 2.9 45.5 1.0
C16 A:S18201 2.9 46.9 1.0
C12 A:S18201 3.0 22.5 1.0
C15 A:S18201 3.1 30.6 1.0
C13 A:S18201 3.2 30.2 1.0
C21 A:S18201 3.3 32.7 1.0
C14 A:S18201 3.4 34.3 1.0
N9 A:S18201 4.0 53.5 1.0
C24 A:S18201 4.3 37.8 1.0
C26 A:S18201 4.3 39.4 1.0
O A:HOH335 4.3 27.8 1.0
C17 A:S18201 4.4 43.1 1.0
C11 A:S18201 4.5 20.8 1.0
C19 A:S18201 4.5 42.9 1.0
C25 A:S18201 4.8 38.5 1.0

Copper binding site 2 out of 2 in 5vkx

Go back to Copper Binding Sites List in 5vkx
Copper binding site 2 out of 2 in the Coordination Chemistry Within A Protein Host: Regulation of the Secondary Coordination Sphere


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Coordination Chemistry Within A Protein Host: Regulation of the Secondary Coordination Sphere within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu202

b:27.8
occ:0.20
CE1 A:TYR83 4.6 33.8 1.0
CD1 A:TYR83 4.9 28.7 1.0
O A:ASN82 4.9 21.5 1.0

Reference:

S.I.Mann, T.Heinisch, T.R.Ward, A.S.Borovik. Coordination Chemistry Within A Protein Host: Regulation of the Secondary Coordination Sphere. Chem. Commun. (Camb.) V. 54 4413 2018.
ISSN: ESSN 1364-548X
PubMed: 29645031
DOI: 10.1039/C8CC01931B
Page generated: Sun Dec 13 11:19:58 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy