Atomistry » Copper » PDB 5onx-5wbc » 5u5b
Atomistry »
  Copper »
    PDB 5onx-5wbc »
      5u5b »

Copper in PDB 5u5b: Coiled Coil Peptide Metal Coordination Framework: Trimer Fold

Protein crystallography data

The structure of Coiled Coil Peptide Metal Coordination Framework: Trimer Fold, PDB code: 5u5b was solved by N.A.Tavenor, M.J.Murnin, W.S.Horne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.81 / 2.40
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.749, 77.749, 55.325, 90.00, 90.00, 90.00
R / Rfree (%) 25.3 / 28.2

Copper Binding Sites:

The binding sites of Copper atom in the Coiled Coil Peptide Metal Coordination Framework: Trimer Fold (pdb code 5u5b). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 7 binding sites of Copper where determined in the Coiled Coil Peptide Metal Coordination Framework: Trimer Fold, PDB code: 5u5b:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7;

Copper binding site 1 out of 7 in 5u5b

Go back to Copper Binding Sites List in 5u5b
Copper binding site 1 out of 7 in the Coiled Coil Peptide Metal Coordination Framework: Trimer Fold


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Coiled Coil Peptide Metal Coordination Framework: Trimer Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu101

b:0.4
occ:1.00
NT2 A:7WJ3 2.0 87.5 1.0
NU3 A:7WJ3 2.2 88.5 1.0
NU1 A:7WJ3 2.2 91.1 1.0
CS1 A:7WJ3 2.9 79.2 1.0
CS2 A:7WJ3 2.9 88.4 1.0
CT1 A:7WJ3 2.9 86.7 1.0
CT3 A:7WJ3 2.9 94.2 1.0
O A:HOH208 3.0 76.4 1.0
CV3 A:7WJ3 3.2 84.2 1.0
CV1 A:7WJ3 3.2 88.0 1.0
O A:HOH209 3.9 81.6 1.0
CR1 A:7WJ3 4.2 79.3 1.0
CR2 A:7WJ3 4.2 81.1 1.0
CU2 A:7WJ3 4.3 83.6 1.0
CU4 A:7WJ3 4.3 99.1 1.0
CW2 A:7WJ3 4.5 99.1 1.0
CW1 A:7WJ3 4.5 95.0 1.0
CQ A:7WJ3 4.7 78.9 1.0
CV2 A:7WJ3 4.9 88.4 1.0
CV4 A:7WJ3 4.9 99.3 1.0

Copper binding site 2 out of 7 in 5u5b

Go back to Copper Binding Sites List in 5u5b
Copper binding site 2 out of 7 in the Coiled Coil Peptide Metal Coordination Framework: Trimer Fold


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Coiled Coil Peptide Metal Coordination Framework: Trimer Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu102

b:58.9
occ:1.00
NT2 A:7WJ25 2.0 57.8 1.0
NU1 A:7WJ25 2.2 59.6 1.0
NU3 A:7WJ25 2.2 61.9 1.0
CS2 A:7WJ25 2.9 49.2 1.0
CS1 A:7WJ25 2.9 57.8 1.0
CT1 A:7WJ25 2.9 56.4 1.0
CT3 A:7WJ25 2.9 54.5 1.0
CV3 A:7WJ25 3.2 62.3 1.0
CV1 A:7WJ25 3.2 53.6 1.0
CR2 A:7WJ25 4.2 46.0 1.0
CR1 A:7WJ25 4.2 49.8 1.0
CU2 A:7WJ25 4.3 54.9 1.0
CU4 A:7WJ25 4.3 63.2 1.0
CW2 A:7WJ25 4.5 71.9 1.0
CW1 A:7WJ25 4.5 57.3 1.0
CQ A:7WJ25 4.7 53.7 1.0
CV2 A:7WJ25 4.9 62.0 1.0
CV4 A:7WJ25 4.9 57.6 1.0

Copper binding site 3 out of 7 in 5u5b

Go back to Copper Binding Sites List in 5u5b
Copper binding site 3 out of 7 in the Coiled Coil Peptide Metal Coordination Framework: Trimer Fold


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Coiled Coil Peptide Metal Coordination Framework: Trimer Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu103

b:0.2
occ:1.00
O C:HOH204 3.7 38.1 1.0
CB A:GLU22 4.1 44.9 1.0
CV2 A:7WJ25 4.2 62.0 1.0
CG A:GLU22 4.3 46.5 1.0
O A:GLU18 4.4 51.4 1.0
CG C:LYS20 4.5 48.3 1.0
CE C:LYS20 4.5 64.8 1.0
CD C:LYS20 4.6 52.8 1.0
CD A:GLU22 4.7 55.9 1.0
C A:GLU18 4.7 48.6 1.0
O A:HOH204 4.8 51.1 1.0
CB A:GLU18 4.8 54.7 1.0
CG1 A:ILE19 4.9 42.1 1.0
CA A:ILE19 4.9 48.7 1.0
N A:ILE19 4.9 54.9 1.0
OE2 A:GLU22 4.9 53.3 1.0
CU2 A:7WJ25 4.9 54.9 1.0

Copper binding site 4 out of 7 in 5u5b

Go back to Copper Binding Sites List in 5u5b
Copper binding site 4 out of 7 in the Coiled Coil Peptide Metal Coordination Framework: Trimer Fold


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Coiled Coil Peptide Metal Coordination Framework: Trimer Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu101

b:0.6
occ:1.00
NT2 B:7WJ3 2.0 0.5 1.0
NU3 B:7WJ3 2.2 0.7 1.0
NU1 B:7WJ3 2.2 0.4 1.0
O B:HOH210 2.9 0.4 1.0
CS1 B:7WJ3 2.9 0.5 1.0
CS2 B:7WJ3 2.9 0.3 1.0
CT3 B:7WJ3 3.0 0.0 1.0
CT1 B:7WJ3 3.0 0.6 1.0
CV1 B:7WJ3 3.2 0.3 1.0
CV3 B:7WJ3 3.2 0.1 1.0
CR1 B:7WJ3 4.2 0.9 1.0
CR2 B:7WJ3 4.2 0.1 1.0
CU4 B:7WJ3 4.3 0.9 1.0
CU2 B:7WJ3 4.3 0.4 1.0
CW2 B:7WJ3 4.5 0.9 1.0
CW1 B:7WJ3 4.5 0.2 1.0
CQ B:7WJ3 4.7 0.1 1.0
CV4 B:7WJ3 4.9 0.9 1.0
CV2 B:7WJ3 4.9 0.1 1.0

Copper binding site 5 out of 7 in 5u5b

Go back to Copper Binding Sites List in 5u5b
Copper binding site 5 out of 7 in the Coiled Coil Peptide Metal Coordination Framework: Trimer Fold


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Coiled Coil Peptide Metal Coordination Framework: Trimer Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu102

b:71.8
occ:1.00
NT2 B:7WJ25 2.0 67.0 1.0
NU1 B:7WJ25 2.2 62.0 1.0
NU3 B:7WJ25 2.2 59.4 1.0
CS2 B:7WJ25 2.9 69.1 1.0
CS1 B:7WJ25 2.9 55.6 1.0
CT3 B:7WJ25 2.9 61.5 1.0
CT1 B:7WJ25 2.9 63.0 1.0
CV1 B:7WJ25 3.2 57.0 1.0
CV3 B:7WJ25 3.2 62.5 1.0
CR2 B:7WJ25 4.2 70.6 1.0
CR1 B:7WJ25 4.2 59.9 1.0
CU2 B:7WJ25 4.3 63.1 1.0
CU4 B:7WJ25 4.3 60.9 1.0
CW1 B:7WJ25 4.5 56.0 1.0
CW2 B:7WJ25 4.5 70.2 1.0
CQ B:7WJ25 4.7 71.7 1.0
CV2 B:7WJ25 4.9 55.7 1.0
CV4 B:7WJ25 4.9 64.7 1.0
O B:HOH212 5.0 65.1 1.0

Copper binding site 6 out of 7 in 5u5b

Go back to Copper Binding Sites List in 5u5b
Copper binding site 6 out of 7 in the Coiled Coil Peptide Metal Coordination Framework: Trimer Fold


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Coiled Coil Peptide Metal Coordination Framework: Trimer Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu101

b:77.2
occ:1.00
NT2 C:7WJ3 2.0 87.0 1.0
NU3 C:7WJ3 2.2 62.8 1.0
NU1 C:7WJ3 2.2 83.6 1.0
CS2 C:7WJ3 2.9 76.6 1.0
CS1 C:7WJ3 2.9 65.5 1.0
CT3 C:7WJ3 3.0 66.5 1.0
CT1 C:7WJ3 3.0 64.4 1.0
O C:HOH208 3.0 63.7 1.0
CV3 C:7WJ3 3.2 61.3 1.0
CV1 C:7WJ3 3.2 73.1 1.0
CR1 C:7WJ3 4.2 70.9 1.0
CR2 C:7WJ3 4.2 67.6 1.0
CU4 C:7WJ3 4.3 68.3 1.0
CU2 C:7WJ3 4.3 58.2 1.0
CW2 C:7WJ3 4.5 55.1 1.0
CW1 C:7WJ3 4.5 51.8 1.0
CQ C:7WJ3 4.7 79.2 1.0
CV4 C:7WJ3 4.9 64.7 1.0
CV2 C:7WJ3 4.9 68.5 1.0

Copper binding site 7 out of 7 in 5u5b

Go back to Copper Binding Sites List in 5u5b
Copper binding site 7 out of 7 in the Coiled Coil Peptide Metal Coordination Framework: Trimer Fold


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Coiled Coil Peptide Metal Coordination Framework: Trimer Fold within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu102

b:53.4
occ:1.00
NT2 C:7WJ25 2.0 59.8 1.0
NU3 C:7WJ25 2.2 52.5 1.0
NU1 C:7WJ25 2.2 45.2 1.0
O C:HOH205 2.7 63.9 1.0
CS1 C:7WJ25 2.9 52.5 1.0
CS2 C:7WJ25 2.9 54.3 1.0
CT1 C:7WJ25 2.9 48.0 1.0
CT3 C:7WJ25 2.9 53.4 1.0
CV3 C:7WJ25 3.2 56.3 1.0
CV1 C:7WJ25 3.2 50.0 1.0
CR1 C:7WJ25 4.2 51.7 1.0
CR2 C:7WJ25 4.2 49.4 1.0
CU2 C:7WJ25 4.3 52.3 1.0
CU4 C:7WJ25 4.3 52.5 1.0
CW2 C:7WJ25 4.5 44.7 1.0
CW1 C:7WJ25 4.5 54.0 1.0
CQ C:7WJ25 4.7 66.5 1.0
CV2 C:7WJ25 4.9 52.5 1.0
CV4 C:7WJ25 4.9 56.9 1.0

Reference:

N.A.Tavenor, M.J.Murnin, W.S.Horne. Supramolecular Metal-Coordination Polymers, Nets, and Frameworks From Synthetic Coiled-Coil Peptides. J. Am. Chem. Soc. V. 139 2212 2017.
ISSN: ESSN 1520-5126
PubMed: 28161945
DOI: 10.1021/JACS.7B00651
Page generated: Sun Dec 13 11:19:45 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy