Copper in PDB 5o4i: Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate
Enzymatic activity of Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate
All present enzymatic activity of Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate:
1.10.3.2;
Protein crystallography data
The structure of Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate, PDB code: 5o4i
was solved by
A.G.Gabdulkhakov,
T.V.Tishchenko,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
1.80
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
76.933,
94.931,
116.587,
90.08,
90.20,
91.65
|
R / Rfree (%)
|
17.7 /
22.2
|
Copper Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
45;
Binding sites:
The binding sites of Copper atom in the Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate
(pdb code 5o4i). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 45 binding sites of Copper where determined in the
Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate, PDB code: 5o4i:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Copper binding site 1 out
of 45 in 5o4i
Go back to
Copper Binding Sites List in 5o4i
Copper binding site 1 out
of 45 in the Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu401
b:18.8
occ:1.00
|
ND1
|
A:HIS294
|
2.0
|
16.0
|
1.0
|
ND1
|
A:HIS232
|
2.1
|
18.5
|
1.0
|
SG
|
A:CYS289
|
2.2
|
18.1
|
1.0
|
CG
|
A:HIS294
|
3.0
|
17.2
|
1.0
|
CE1
|
A:HIS294
|
3.0
|
18.0
|
1.0
|
CE1
|
A:HIS232
|
3.0
|
14.7
|
1.0
|
CG
|
A:HIS232
|
3.0
|
16.1
|
1.0
|
CB
|
A:CYS289
|
3.2
|
16.1
|
1.0
|
CB
|
A:HIS294
|
3.3
|
18.0
|
1.0
|
CB
|
A:HIS232
|
3.4
|
15.8
|
1.0
|
SD
|
A:MET299
|
3.5
|
20.2
|
1.0
|
CA
|
A:HIS232
|
3.7
|
16.4
|
1.0
|
CG2
|
A:VAL291
|
4.0
|
20.5
|
1.0
|
CB
|
A:VAL291
|
4.1
|
18.2
|
1.0
|
CD2
|
A:HIS294
|
4.1
|
18.3
|
1.0
|
NE2
|
A:HIS294
|
4.1
|
17.0
|
1.0
|
NE2
|
A:HIS232
|
4.1
|
16.4
|
1.0
|
CE
|
A:MET299
|
4.2
|
22.0
|
1.0
|
CD2
|
A:HIS232
|
4.2
|
16.1
|
1.0
|
O
|
A:TYR231
|
4.2
|
15.2
|
1.0
|
CA
|
A:CYS289
|
4.5
|
15.8
|
1.0
|
N
|
A:THR233
|
4.6
|
16.7
|
1.0
|
N
|
A:HIS232
|
4.7
|
16.5
|
1.0
|
C
|
A:HIS232
|
4.7
|
18.7
|
1.0
|
CA
|
A:HIS294
|
4.8
|
19.1
|
1.0
|
C
|
A:TYR231
|
4.8
|
15.8
|
1.0
|
CD2
|
A:PHE196
|
4.9
|
17.6
|
1.0
|
CG1
|
A:VAL291
|
4.9
|
15.8
|
1.0
|
N
|
A:VAL291
|
5.0
|
17.6
|
1.0
|
CG
|
A:MET299
|
5.0
|
20.6
|
1.0
|
|
Copper binding site 2 out
of 45 in 5o4i
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Copper Binding Sites List in 5o4i
Copper binding site 2 out
of 45 in the Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu402
b:27.8
occ:0.54
|
NE2
|
A:HIS237
|
2.2
|
23.9
|
1.0
|
NE2
|
A:HIS288
|
2.2
|
21.1
|
1.0
|
NE2
|
C:HIS159
|
2.3
|
20.0
|
1.0
|
O
|
A:HOH517
|
2.3
|
23.0
|
1.0
|
CE1
|
A:HIS288
|
3.0
|
20.3
|
1.0
|
CE1
|
A:HIS237
|
3.0
|
27.1
|
1.0
|
CE1
|
C:HIS159
|
3.2
|
18.6
|
1.0
|
CD2
|
C:HIS159
|
3.2
|
18.6
|
1.0
|
CD2
|
A:HIS237
|
3.3
|
22.0
|
1.0
|
CD2
|
A:HIS288
|
3.3
|
21.0
|
1.0
|
O
|
C:HOH559
|
3.6
|
25.1
|
1.0
|
CD2
|
A:HIS235
|
3.8
|
21.6
|
1.0
|
CU
|
C:CU401
|
3.8
|
23.0
|
0.5
|
NE2
|
C:HIS103
|
3.9
|
34.9
|
1.0
|
CE1
|
C:HIS103
|
3.9
|
31.9
|
1.0
|
NE2
|
A:HIS235
|
4.1
|
22.6
|
1.0
|
ND1
|
A:HIS288
|
4.2
|
20.0
|
1.0
|
ND1
|
A:HIS237
|
4.2
|
23.2
|
1.0
|
ND1
|
C:HIS159
|
4.3
|
20.0
|
1.0
|
CG
|
A:HIS237
|
4.4
|
21.6
|
1.0
|
CG
|
C:HIS159
|
4.4
|
19.3
|
1.0
|
CG
|
A:HIS288
|
4.4
|
18.5
|
1.0
|
ND1
|
C:HIS103
|
4.4
|
33.4
|
1.0
|
CD2
|
C:HIS103
|
4.5
|
32.5
|
1.0
|
NE2
|
A:HIS290
|
4.5
|
20.6
|
1.0
|
CU
|
C:CU401
|
4.7
|
24.4
|
0.5
|
CD2
|
C:HIS165
|
4.7
|
25.9
|
1.0
|
SD
|
A:MET286
|
4.8
|
41.6
|
1.0
|
CG
|
C:HIS103
|
4.8
|
29.4
|
1.0
|
CD2
|
A:HIS290
|
4.8
|
19.0
|
1.0
|
|
Copper binding site 3 out
of 45 in 5o4i
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Copper Binding Sites List in 5o4i
Copper binding site 3 out
of 45 in the Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu403
b:22.5
occ:0.50
|
CU
|
A:CU403
|
0.0
|
22.5
|
0.5
|
CU
|
A:CU403
|
0.7
|
22.8
|
0.5
|
NE2
|
A:HIS105
|
1.9
|
18.1
|
1.0
|
NE2
|
B:HIS290
|
2.0
|
16.2
|
1.0
|
NE2
|
A:HIS157
|
2.1
|
18.6
|
1.0
|
O
|
B:HOH562
|
2.6
|
23.3
|
1.0
|
CE1
|
A:HIS105
|
2.9
|
18.0
|
1.0
|
CE1
|
B:HIS290
|
2.9
|
14.5
|
1.0
|
CD2
|
B:HIS290
|
3.0
|
14.5
|
1.0
|
CD2
|
A:HIS105
|
3.0
|
18.0
|
1.0
|
CE1
|
A:HIS157
|
3.0
|
18.4
|
1.0
|
NE2
|
A:HIS103
|
3.1
|
26.6
|
1.0
|
CD2
|
A:HIS157
|
3.1
|
19.2
|
1.0
|
CD2
|
A:HIS103
|
3.4
|
24.1
|
1.0
|
ND1
|
A:HIS105
|
4.0
|
17.0
|
1.0
|
ND1
|
B:HIS290
|
4.0
|
13.2
|
1.0
|
NE2
|
B:HIS235
|
4.1
|
17.3
|
1.0
|
CG
|
B:HIS290
|
4.1
|
14.3
|
1.0
|
CG
|
A:HIS105
|
4.1
|
16.2
|
1.0
|
ND1
|
A:HIS157
|
4.1
|
17.9
|
1.0
|
CB
|
A:ALA267
|
4.2
|
15.0
|
1.0
|
CG
|
A:HIS157
|
4.2
|
17.1
|
1.0
|
CE1
|
A:HIS155
|
4.3
|
16.8
|
1.0
|
CE1
|
A:HIS103
|
4.3
|
26.2
|
1.0
|
CD2
|
B:HIS235
|
4.3
|
16.3
|
1.0
|
CU
|
B:CU402
|
4.5
|
28.9
|
0.7
|
O
|
A:HOH564
|
4.5
|
20.8
|
1.0
|
CE1
|
B:HIS235
|
4.7
|
15.9
|
1.0
|
CG
|
A:HIS103
|
4.8
|
21.2
|
1.0
|
|
Copper binding site 4 out
of 45 in 5o4i
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Copper Binding Sites List in 5o4i
Copper binding site 4 out
of 45 in the Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu403
b:22.8
occ:0.50
|
CU
|
A:CU403
|
0.0
|
22.8
|
0.5
|
CU
|
A:CU403
|
0.7
|
22.5
|
0.5
|
O
|
B:HOH562
|
2.0
|
23.3
|
1.0
|
NE2
|
B:HIS290
|
2.1
|
16.2
|
1.0
|
NE2
|
A:HIS105
|
2.2
|
18.1
|
1.0
|
NE2
|
A:HIS157
|
2.4
|
18.6
|
1.0
|
NE2
|
A:HIS103
|
2.6
|
26.6
|
1.0
|
CE1
|
A:HIS157
|
3.1
|
18.4
|
1.0
|
CD2
|
A:HIS103
|
3.1
|
24.1
|
1.0
|
CD2
|
B:HIS290
|
3.1
|
14.5
|
1.0
|
CE1
|
A:HIS105
|
3.1
|
18.0
|
1.0
|
CE1
|
B:HIS290
|
3.2
|
14.5
|
1.0
|
CD2
|
A:HIS105
|
3.2
|
18.0
|
1.0
|
CD2
|
A:HIS157
|
3.5
|
19.2
|
1.0
|
NE2
|
B:HIS235
|
3.7
|
17.3
|
1.0
|
CE1
|
A:HIS103
|
3.8
|
26.2
|
1.0
|
CU
|
B:CU402
|
3.9
|
28.9
|
0.7
|
CD2
|
B:HIS235
|
4.0
|
16.3
|
1.0
|
ND1
|
B:HIS290
|
4.2
|
13.2
|
1.0
|
CG
|
B:HIS290
|
4.2
|
14.3
|
1.0
|
O
|
A:HOH564
|
4.2
|
20.8
|
1.0
|
ND1
|
A:HIS105
|
4.2
|
17.0
|
1.0
|
ND1
|
A:HIS157
|
4.3
|
17.9
|
1.0
|
CG
|
A:HIS105
|
4.3
|
16.2
|
1.0
|
CG
|
A:HIS103
|
4.3
|
21.2
|
1.0
|
CE1
|
B:HIS235
|
4.5
|
15.9
|
1.0
|
CG
|
A:HIS157
|
4.5
|
17.1
|
1.0
|
ND1
|
A:HIS103
|
4.6
|
25.4
|
1.0
|
CB
|
A:ALA267
|
4.7
|
15.0
|
1.0
|
CE1
|
B:HIS288
|
4.8
|
16.8
|
1.0
|
CD2
|
A:HIS159
|
4.8
|
17.3
|
1.0
|
CG
|
B:HIS235
|
4.8
|
16.3
|
1.0
|
CE1
|
A:HIS155
|
4.9
|
16.8
|
1.0
|
NE2
|
B:HIS288
|
4.9
|
17.1
|
1.0
|
NE2
|
A:HIS159
|
5.0
|
17.9
|
1.0
|
|
Copper binding site 5 out
of 45 in 5o4i
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Copper Binding Sites List in 5o4i
Copper binding site 5 out
of 45 in the Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu401
b:15.7
occ:1.00
|
ND1
|
B:HIS232
|
2.0
|
13.3
|
1.0
|
ND1
|
B:HIS294
|
2.0
|
14.5
|
1.0
|
SG
|
B:CYS289
|
2.2
|
15.2
|
1.0
|
CE1
|
B:HIS232
|
2.9
|
13.7
|
1.0
|
CG
|
B:HIS294
|
3.0
|
16.1
|
1.0
|
CG
|
B:HIS232
|
3.0
|
13.7
|
1.0
|
CE1
|
B:HIS294
|
3.0
|
15.7
|
1.0
|
CB
|
B:CYS289
|
3.2
|
14.9
|
1.0
|
CB
|
B:HIS294
|
3.3
|
15.5
|
1.0
|
CB
|
B:HIS232
|
3.4
|
14.3
|
1.0
|
SD
|
B:MET299
|
3.4
|
17.6
|
1.0
|
CA
|
B:HIS232
|
3.7
|
14.8
|
1.0
|
CE
|
B:MET299
|
4.0
|
16.7
|
1.0
|
NE2
|
B:HIS232
|
4.0
|
14.0
|
1.0
|
O
|
B:TYR231
|
4.0
|
15.8
|
1.0
|
NE2
|
B:HIS294
|
4.1
|
16.6
|
1.0
|
CD2
|
B:HIS232
|
4.1
|
13.8
|
1.0
|
CD2
|
B:HIS294
|
4.1
|
17.3
|
1.0
|
CG2
|
B:VAL291
|
4.1
|
14.3
|
1.0
|
CB
|
B:VAL291
|
4.1
|
13.8
|
1.0
|
CA
|
B:CYS289
|
4.5
|
14.4
|
1.0
|
N
|
B:THR233
|
4.6
|
14.5
|
1.0
|
N
|
B:HIS232
|
4.7
|
15.7
|
1.0
|
C
|
B:HIS232
|
4.8
|
15.7
|
1.0
|
CD2
|
B:PHE196
|
4.8
|
15.6
|
1.0
|
CA
|
B:HIS294
|
4.8
|
16.1
|
1.0
|
C
|
B:TYR231
|
4.8
|
16.5
|
1.0
|
CG
|
B:MET299
|
4.9
|
18.4
|
1.0
|
CE2
|
B:PHE196
|
4.9
|
15.4
|
1.0
|
CG1
|
B:VAL291
|
5.0
|
13.6
|
1.0
|
N
|
B:VAL291
|
5.0
|
14.4
|
1.0
|
|
Copper binding site 6 out
of 45 in 5o4i
Go back to
Copper Binding Sites List in 5o4i
Copper binding site 6 out
of 45 in the Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu402
b:28.9
occ:0.66
|
NE2
|
B:HIS237
|
2.0
|
19.4
|
1.0
|
O
|
B:HOH562
|
2.0
|
23.3
|
1.0
|
NE2
|
A:HIS159
|
2.1
|
17.9
|
1.0
|
NE2
|
B:HIS288
|
2.2
|
17.1
|
1.0
|
CE1
|
B:HIS237
|
2.8
|
18.9
|
1.0
|
CD2
|
A:HIS159
|
3.1
|
17.3
|
1.0
|
CE1
|
B:HIS288
|
3.1
|
16.8
|
1.0
|
CE1
|
A:HIS159
|
3.2
|
19.0
|
1.0
|
CD2
|
B:HIS237
|
3.2
|
17.1
|
1.0
|
CD2
|
B:HIS288
|
3.3
|
19.7
|
1.0
|
O
|
A:HOH564
|
3.7
|
20.8
|
1.0
|
NE2
|
A:HIS103
|
3.8
|
26.6
|
1.0
|
CU
|
A:CU403
|
3.9
|
22.8
|
0.5
|
CE1
|
A:HIS103
|
3.9
|
26.2
|
1.0
|
CD2
|
B:HIS235
|
3.9
|
16.3
|
1.0
|
ND1
|
B:HIS237
|
3.9
|
21.3
|
1.0
|
CG
|
B:HIS237
|
4.2
|
18.9
|
1.0
|
NE2
|
B:HIS235
|
4.2
|
17.3
|
1.0
|
CG
|
A:HIS159
|
4.2
|
17.5
|
1.0
|
ND1
|
B:HIS288
|
4.2
|
17.3
|
1.0
|
ND1
|
A:HIS159
|
4.2
|
17.8
|
1.0
|
CG
|
B:HIS288
|
4.4
|
16.7
|
1.0
|
CD2
|
A:HIS103
|
4.5
|
24.1
|
1.0
|
ND1
|
A:HIS103
|
4.5
|
25.4
|
1.0
|
CU
|
A:CU403
|
4.5
|
22.5
|
0.5
|
NE2
|
B:HIS290
|
4.5
|
16.2
|
1.0
|
ND1
|
A:HIS165
|
4.8
|
22.2
|
1.0
|
SD
|
B:MET286
|
4.8
|
37.3
|
1.0
|
CG
|
A:HIS103
|
4.8
|
21.2
|
1.0
|
CD2
|
B:HIS290
|
4.9
|
14.5
|
1.0
|
|
Copper binding site 7 out
of 45 in 5o4i
Go back to
Copper Binding Sites List in 5o4i
Copper binding site 7 out
of 45 in the Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 7 of Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu403
b:23.6
occ:0.50
|
CU
|
B:CU403
|
0.0
|
23.6
|
0.5
|
CU
|
B:CU403
|
0.8
|
21.7
|
0.5
|
NE2
|
B:HIS105
|
1.9
|
21.4
|
1.0
|
NE2
|
C:HIS290
|
2.0
|
17.2
|
1.0
|
NE2
|
B:HIS157
|
2.1
|
14.2
|
1.0
|
O
|
C:HOH523
|
2.6
|
23.5
|
1.0
|
CD2
|
B:HIS105
|
2.9
|
20.6
|
1.0
|
CE1
|
C:HIS290
|
3.0
|
17.4
|
1.0
|
CE1
|
B:HIS105
|
3.0
|
18.6
|
1.0
|
CD2
|
C:HIS290
|
3.0
|
14.7
|
1.0
|
CE1
|
B:HIS157
|
3.1
|
16.6
|
1.0
|
NE2
|
B:HIS103
|
3.1
|
26.4
|
1.0
|
CD2
|
B:HIS157
|
3.1
|
15.2
|
1.0
|
CD2
|
B:HIS103
|
3.5
|
27.4
|
1.0
|
CE1
|
B:HIS155
|
4.0
|
17.0
|
1.0
|
CG
|
B:HIS105
|
4.0
|
18.1
|
1.0
|
ND1
|
B:HIS105
|
4.0
|
16.6
|
1.0
|
ND1
|
C:HIS290
|
4.1
|
14.4
|
1.0
|
CG
|
C:HIS290
|
4.1
|
14.6
|
1.0
|
CB
|
B:ALA267
|
4.2
|
14.6
|
1.0
|
ND1
|
B:HIS157
|
4.2
|
17.7
|
1.0
|
CG
|
B:HIS157
|
4.2
|
16.0
|
1.0
|
CE1
|
B:HIS103
|
4.3
|
25.4
|
1.0
|
NE2
|
C:HIS235
|
4.3
|
18.3
|
1.0
|
CU
|
C:CU403
|
4.5
|
27.8
|
0.7
|
CD2
|
C:HIS235
|
4.5
|
18.1
|
1.0
|
O
|
B:HOH570
|
4.7
|
23.1
|
1.0
|
CG
|
B:HIS103
|
4.8
|
25.2
|
1.0
|
ND1
|
B:HIS155
|
4.8
|
16.4
|
1.0
|
NE2
|
B:HIS155
|
4.8
|
16.4
|
1.0
|
CE1
|
C:HIS235
|
4.8
|
16.7
|
1.0
|
|
Copper binding site 8 out
of 45 in 5o4i
Go back to
Copper Binding Sites List in 5o4i
Copper binding site 8 out
of 45 in the Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 8 of Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu403
b:21.7
occ:0.50
|
CU
|
B:CU403
|
0.0
|
21.7
|
0.5
|
CU
|
B:CU403
|
0.8
|
23.6
|
0.5
|
O
|
C:HOH523
|
1.9
|
23.5
|
1.0
|
NE2
|
C:HIS290
|
2.2
|
17.2
|
1.0
|
NE2
|
B:HIS105
|
2.3
|
21.4
|
1.0
|
NE2
|
B:HIS157
|
2.3
|
14.2
|
1.0
|
NE2
|
B:HIS103
|
2.6
|
26.4
|
1.0
|
CE1
|
B:HIS157
|
3.1
|
16.6
|
1.0
|
CD2
|
B:HIS103
|
3.1
|
27.4
|
1.0
|
CD2
|
C:HIS290
|
3.1
|
14.7
|
1.0
|
CD2
|
B:HIS105
|
3.2
|
20.6
|
1.0
|
CE1
|
C:HIS290
|
3.2
|
17.4
|
1.0
|
CE1
|
B:HIS105
|
3.3
|
18.6
|
1.0
|
CD2
|
B:HIS157
|
3.5
|
15.2
|
1.0
|
CE1
|
B:HIS103
|
3.7
|
25.4
|
1.0
|
CU
|
C:CU403
|
3.8
|
27.8
|
0.7
|
NE2
|
C:HIS235
|
3.9
|
18.3
|
1.0
|
CD2
|
C:HIS235
|
4.1
|
18.1
|
1.0
|
ND1
|
B:HIS157
|
4.3
|
17.7
|
1.0
|
CG
|
C:HIS290
|
4.3
|
14.6
|
1.0
|
ND1
|
C:HIS290
|
4.3
|
14.4
|
1.0
|
CG
|
B:HIS103
|
4.3
|
25.2
|
1.0
|
CG
|
B:HIS105
|
4.3
|
18.1
|
1.0
|
ND1
|
B:HIS105
|
4.3
|
16.6
|
1.0
|
O
|
B:HOH570
|
4.4
|
23.1
|
1.0
|
CG
|
B:HIS157
|
4.5
|
16.0
|
1.0
|
ND1
|
B:HIS103
|
4.6
|
27.4
|
1.0
|
CE1
|
C:HIS235
|
4.6
|
16.7
|
1.0
|
CE1
|
B:HIS155
|
4.8
|
17.0
|
1.0
|
CB
|
B:ALA267
|
4.8
|
14.6
|
1.0
|
CE1
|
C:HIS288
|
4.8
|
17.7
|
1.0
|
CD2
|
B:HIS159
|
4.9
|
18.4
|
1.0
|
CG
|
C:HIS235
|
4.9
|
15.8
|
1.0
|
NE2
|
C:HIS288
|
4.9
|
16.9
|
1.0
|
|
Copper binding site 9 out
of 45 in 5o4i
Go back to
Copper Binding Sites List in 5o4i
Copper binding site 9 out
of 45 in the Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 9 of Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu401
b:24.4
occ:0.50
|
CU
|
C:CU401
|
0.0
|
24.4
|
0.5
|
CU
|
C:CU401
|
0.9
|
23.0
|
0.5
|
NE2
|
C:HIS105
|
2.0
|
16.6
|
1.0
|
NE2
|
A:HIS290
|
2.1
|
20.6
|
1.0
|
NE2
|
C:HIS157
|
2.2
|
17.5
|
1.0
|
O
|
A:HOH517
|
2.6
|
23.0
|
1.0
|
CD2
|
C:HIS105
|
2.9
|
17.6
|
1.0
|
CE1
|
A:HIS290
|
2.9
|
20.9
|
1.0
|
CE1
|
C:HIS105
|
3.0
|
15.4
|
1.0
|
CD2
|
C:HIS157
|
3.1
|
18.4
|
1.0
|
CD2
|
A:HIS290
|
3.1
|
19.0
|
1.0
|
NE2
|
C:HIS103
|
3.1
|
34.9
|
1.0
|
CE1
|
C:HIS157
|
3.2
|
18.6
|
1.0
|
CD2
|
C:HIS103
|
3.4
|
32.5
|
1.0
|
CE1
|
C:HIS155
|
4.0
|
16.7
|
1.0
|
CG
|
C:HIS105
|
4.0
|
16.8
|
1.0
|
CB
|
C:ALA267
|
4.0
|
17.0
|
1.0
|
ND1
|
A:HIS290
|
4.0
|
18.6
|
1.0
|
ND1
|
C:HIS105
|
4.1
|
15.2
|
1.0
|
CG
|
A:HIS290
|
4.2
|
17.9
|
1.0
|
CG
|
C:HIS157
|
4.2
|
17.4
|
1.0
|
ND1
|
C:HIS157
|
4.3
|
18.5
|
1.0
|
NE2
|
A:HIS235
|
4.4
|
22.6
|
1.0
|
CE1
|
C:HIS103
|
4.4
|
31.9
|
1.0
|
CD2
|
A:HIS235
|
4.6
|
21.6
|
1.0
|
O
|
C:HOH559
|
4.7
|
25.1
|
1.0
|
CU
|
A:CU402
|
4.7
|
27.8
|
0.5
|
NE2
|
C:HIS155
|
4.8
|
17.1
|
1.0
|
CG
|
C:HIS103
|
4.8
|
29.4
|
1.0
|
CE1
|
A:HIS235
|
4.8
|
23.1
|
1.0
|
ND1
|
C:HIS155
|
4.8
|
16.6
|
1.0
|
|
Copper binding site 10 out
of 45 in 5o4i
Go back to
Copper Binding Sites List in 5o4i
Copper binding site 10 out
of 45 in the Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 10 of Crystal Structure of Mutant M54L/M64L/M96L of Two-Domain Laccase From Streptomyces Griseoflavus Dialyzed Against Solution Containing 0.25 Mm Copper Sulfate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu401
b:23.0
occ:0.50
|
CU
|
C:CU401
|
0.0
|
23.0
|
0.5
|
CU
|
C:CU401
|
0.9
|
24.4
|
0.5
|
O
|
A:HOH517
|
1.7
|
23.0
|
1.0
|
NE2
|
A:HIS290
|
2.0
|
20.6
|
1.0
|
NE2
|
C:HIS157
|
2.4
|
17.5
|
1.0
|
NE2
|
C:HIS105
|
2.4
|
16.6
|
1.0
|
NE2
|
C:HIS103
|
2.7
|
34.9
|
1.0
|
CE1
|
A:HIS290
|
3.0
|
20.9
|
1.0
|
CD2
|
A:HIS290
|
3.1
|
19.0
|
1.0
|
CD2
|
C:HIS103
|
3.1
|
32.5
|
1.0
|
CE1
|
C:HIS157
|
3.1
|
18.6
|
1.0
|
CD2
|
C:HIS105
|
3.3
|
17.6
|
1.0
|
CE1
|
C:HIS105
|
3.4
|
15.4
|
1.0
|
CD2
|
C:HIS157
|
3.5
|
18.4
|
1.0
|
CE1
|
C:HIS103
|
3.8
|
31.9
|
1.0
|
CU
|
A:CU402
|
3.8
|
27.8
|
0.5
|
NE2
|
A:HIS235
|
3.9
|
22.6
|
1.0
|
ND1
|
A:HIS290
|
4.1
|
18.6
|
1.0
|
O
|
C:HOH559
|
4.1
|
25.1
|
1.0
|
CD2
|
A:HIS235
|
4.1
|
21.6
|
1.0
|
CG
|
A:HIS290
|
4.2
|
17.9
|
1.0
|
CG
|
C:HIS103
|
4.3
|
29.4
|
1.0
|
ND1
|
C:HIS157
|
4.3
|
18.5
|
1.0
|
ND1
|
C:HIS105
|
4.5
|
15.2
|
1.0
|
CG
|
C:HIS105
|
4.5
|
16.8
|
1.0
|
CG
|
C:HIS157
|
4.6
|
17.4
|
1.0
|
CE1
|
A:HIS235
|
4.6
|
23.1
|
1.0
|
CB
|
C:ALA267
|
4.6
|
17.0
|
1.0
|
ND1
|
C:HIS103
|
4.7
|
33.4
|
1.0
|
CE1
|
A:HIS288
|
4.8
|
20.3
|
1.0
|
CE1
|
C:HIS155
|
4.8
|
16.7
|
1.0
|
CD2
|
C:HIS159
|
4.9
|
18.6
|
1.0
|
CG
|
A:HIS235
|
4.9
|
21.2
|
1.0
|
NE2
|
C:HIS159
|
4.9
|
20.0
|
1.0
|
NE2
|
A:HIS288
|
5.0
|
21.1
|
1.0
|
|
Reference:
A.G.Gabdulkhakov,
O.S.Kostareva,
I.A.Kolyadenko,
A.O.Mikhaylina,
L.I.Trubitsina,
S.V.Tishchenko.
Incorporation of Copper Ions Into T2/T3 Centers of Two-Domain Laccases. Mol.Biol.(Moscow) V. 52 29 2018.
ISSN: ISSN 0026-8984
PubMed: 29512633
DOI: 10.7868/S0026898418010056
Page generated: Wed Jul 31 04:49:16 2024
|