Atomistry » Copper » PDB 5nlo-5ogf » 5o2x
Atomistry »
  Copper »
    PDB 5nlo-5ogf »
      5o2x »

Copper in PDB 5o2x: Extended Catalytic Domain of H. Jecorina LPMO9A A.K.A EG4

Protein crystallography data

The structure of Extended Catalytic Domain of H. Jecorina LPMO9A A.K.A EG4, PDB code: 5o2x was solved by H.Hansson, S.Karkehabadi, N.E.Mikkelsen, M.Sandgren, B.Kelemen, T.Kaper, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.29 / 0.95
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.820, 61.550, 47.780, 90.00, 112.03, 90.00
R / Rfree (%) 11.5 / 12.7

Copper Binding Sites:

The binding sites of Copper atom in the Extended Catalytic Domain of H. Jecorina LPMO9A A.K.A EG4 (pdb code 5o2x). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Extended Catalytic Domain of H. Jecorina LPMO9A A.K.A EG4, PDB code: 5o2x:

Copper binding site 1 out of 1 in 5o2x

Go back to Copper Binding Sites List in 5o2x
Copper binding site 1 out of 1 in the Extended Catalytic Domain of H. Jecorina LPMO9A A.K.A EG4


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Extended Catalytic Domain of H. Jecorina LPMO9A A.K.A EG4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu318

b:5.3
occ:0.82
ND1 A:HIC1 1.9 6.7 1.0
NE2 A:HIS86 1.9 6.0 1.0
O A:HOH431 2.0 9.6 0.4
N A:HIC1 2.2 6.1 1.0
O A:HOH632 2.4 18.7 0.8
OH A:TYR174 2.8 5.4 1.0
CG A:HIC1 2.9 6.3 1.0
CE1 A:HIS86 2.9 6.5 1.0
CD2 A:HIS86 3.0 5.8 1.0
CE1 A:HIC1 3.0 7.2 1.0
CA A:HIC1 3.1 5.3 1.0
CB A:HIC1 3.3 6.2 1.0
OE1 A:GLN172 3.9 6.8 1.0
O3 A:SO4319 3.9 20.5 0.6
CZ A:TYR174 3.9 4.4 1.0
CD2 A:HIC1 4.1 7.0 1.0
NE2 A:HIC1 4.1 7.7 1.0
ND1 A:HIS86 4.1 6.2 1.0
CG A:HIS86 4.1 5.5 1.0
CG A:PRO85 4.3 7.3 1.0
O A:HOH703 4.5 17.9 0.9
CE2 A:TYR174 4.5 4.5 1.0
C A:HIC1 4.5 5.1 1.0
O A:HOH726 4.7 18.9 0.7
O A:HIC1 4.9 6.1 1.0
CE1 A:TYR174 4.9 4.3 1.0
CD A:GLN172 4.9 6.4 1.0
O4 A:SO4319 5.0 17.9 0.9

Reference:

H.Hansson, S.Karkehabadi, N.Mikkelsen, N.R.Douglas, S.Kim, A.Lam, T.Kaper, B.Kelemen, K.K.Meier, S.M.Jones, E.I.Solomon, M.Sandgren. High-Resolution Structure of A Lytic Polysaccharide Monooxygenase From Hypocrea Jecorina Reveals A Predicted Linker As An Integral Part of the Catalytic Domain. J. Biol. Chem. V. 292 19099 2017.
ISSN: ESSN 1083-351X
PubMed: 28900033
DOI: 10.1074/JBC.M117.799767
Page generated: Sun Dec 13 11:19:11 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy