Copper in PDB 5o2w: Extended Catalytic Domain of Hypocrea Jecorina Lpmo 9A.

The structure of Extended Catalytic Domain of Hypocrea Jecorina Lpmo 9A., PDB code: 5o2w was solved by S.Karkehabadi, H.Hansson, M.Sandgren, N.E.Mikelssen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.58 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	42.936, 62.125, 48.015, 90.00, 111.79, 90.00
R / Rfree (%)	20 / 23.8

The binding sites of Copper atom in the Extended Catalytic Domain of Hypocrea Jecorina Lpmo 9A. (pdb code 5o2w). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Extended Catalytic Domain of Hypocrea Jecorina Lpmo 9A., PDB code: 5o2w:

Copper binding site 1 out of 1 in the Extended Catalytic Domain of Hypocrea Jecorina Lpmo 9A.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Extended Catalytic Domain of Hypocrea Jecorina Lpmo 9A. within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu318 b:10.0 occ:0.82 ND1 A:HIC1 2.0 9.4 1.0 NE2 A:HIS86 2.1 8.7 1.0 N A:HIC1 2.3 9.0 1.0 O A:HOH404 2.3 14.3 0.4 O A:HOH570 2.6 28.4 0.8 OH A:TYR174 2.9 4.3 1.0 CG A:HIC1 2.9 9.2 1.0 CD2 A:HIS86 2.9 8.3 1.0 CE1 A:HIC1 3.1 9.2 1.0 CA A:HIC1 3.2 8.3 1.0 CE1 A:HIS86 3.2 8.5 1.0 CB A:HIC1 3.3 8.7 1.0 O3 A:SO4319 3.6 35.2 0.6 OE1 A:GLN172 3.9 6.5 1.0 CZ A:TYR174 4.0 4.3 1.0 CD2 A:HIC1 4.1 9.2 1.0 NE2 A:HIC1 4.1 9.2 1.0 CG A:HIS86 4.1 8.0 1.0 ND1 A:HIS86 4.2 8.3 1.0 CG A:PRO85 4.4 7.1 1.0 C A:HIC1 4.5 7.7 1.0 O A:HOH683 4.6 23.8 0.9 CE2 A:TYR174 4.6 4.3 1.0 O4 A:SO4319 4.6 38.0 0.9 S A:SO4319 4.7 41.9 0.6 O A:HOH741 4.9 36.1 1.0 O A:HOH712 4.9 19.6 0.7 CE1 A:TYR174 4.9 4.3 1.0 CD A:GLN172 4.9 6.0 1.0 O A:HIC1 5.0 7.7 1.0

H.Hansson, S.Karkehabadi, N.Mikkelsen, N.R.Douglas, S.Kim, A.Lam, T.Kaper, B.Kelemen, K.K.Meier, S.M.Jones, E.I.Solomon, M.Sandgren. High-Resolution Structure of A Lytic Polysaccharide Monooxygenase From Hypocrea Jecorina Reveals A Predicted Linker As An Integral Part of the Catalytic Domain. J. Biol. Chem. V. 292 19099 2017.
ISSN: ESSN 1083-351X
PubMed: 28900033
DOI: 10.1074/JBC.M117.799767