Atomistry » Copper » PDB 5nlp-5ogg » 5nq7
Atomistry »
  Copper »
    PDB 5nlp-5ogg »
      5nq7 »

Copper in PDB 5nq7: Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I

Enzymatic activity of Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I

All present enzymatic activity of Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I:
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I, PDB code: 5nq7 was solved by M.Orlikowska, M.De J.Rostro-Alanis, A.Bujacz, C.Hernandez-Luna, R.Rubio, R.Parra, G.Bujacz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.39 / 2.75
Space group P 43 3 2
Cell size a, b, c (Å), α, β, γ (°) 185.550, 185.550, 185.550, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 20.7

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I (pdb code 5nq7). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I, PDB code: 5nq7:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 5nq7

Go back to Copper Binding Sites List in 5nq7
Copper binding site 1 out of 4 in the Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu617

b:47.2
occ:1.00
NE2 A:HIS421 2.1 43.0 1.0
NE2 A:HIS132 2.1 41.2 1.0
O1 A:PER621 2.1 57.2 1.0
O2 A:PER621 2.2 45.9 1.0
NE2 A:HIS471 2.2 48.9 1.0
CE1 A:HIS421 2.9 43.4 1.0
CD2 A:HIS132 3.1 43.7 1.0
CE1 A:HIS132 3.1 42.9 1.0
CE1 A:HIS471 3.1 50.3 1.0
CD2 A:HIS421 3.2 43.1 1.0
CD2 A:HIS471 3.2 50.6 1.0
CD2 A:HIS419 3.9 45.3 1.0
CU A:CU619 4.1 45.9 1.0
ND1 A:HIS421 4.1 43.5 1.0
ND1 A:HIS132 4.2 45.8 1.0
CG A:HIS132 4.2 43.8 1.0
CG A:HIS421 4.2 42.9 1.0
ND1 A:HIS471 4.2 50.5 1.0
CG A:HIS471 4.3 48.8 1.0
CD2 A:PHE469 4.3 39.4 1.0
CD2 A:HIS85 4.4 42.9 1.0
CB A:PHE469 4.5 44.7 1.0
NE2 A:HIS85 4.6 42.5 1.0
CG2 A:VAL100 4.6 46.1 1.0
NE2 A:HIS419 4.7 44.8 1.0
CU A:CU618 4.7 45.0 1.0
NE2 A:HIS473 4.9 46.1 1.0
CG A:PHE469 4.9 40.6 1.0
CE1 A:HIS130 4.9 38.7 1.0
CD2 A:HIS473 5.0 46.6 1.0

Copper binding site 2 out of 4 in 5nq7

Go back to Copper Binding Sites List in 5nq7
Copper binding site 2 out of 4 in the Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu618

b:45.0
occ:1.00
ND1 A:HIS87 2.1 46.0 1.0
NE2 A:HIS130 2.2 36.7 1.0
NE2 A:HIS473 2.2 46.1 1.0
O2 A:PER621 2.6 45.9 1.0
CD2 A:HIS130 3.1 37.0 1.0
CE1 A:HIS87 3.1 48.7 1.0
O1 A:PER621 3.1 57.2 1.0
CE1 A:HIS473 3.1 45.6 1.0
CG A:HIS87 3.1 46.7 1.0
CE1 A:HIS130 3.2 38.7 1.0
CD2 A:HIS473 3.2 46.6 1.0
CB A:HIS87 3.5 43.0 1.0
CU A:CU619 3.7 45.9 1.0
CD2 A:HIS85 3.8 42.9 1.0
CZ2 A:TRP128 3.8 37.9 1.0
CE2 A:TRP128 4.1 36.7 1.0
NE1 A:TRP128 4.2 37.3 1.0
NE2 A:HIS87 4.2 48.8 1.0
CG A:HIS130 4.2 37.2 1.0
ND1 A:HIS473 4.2 50.0 1.0
CD2 A:HIS87 4.3 49.1 1.0
ND1 A:HIS130 4.3 39.2 1.0
NE2 A:HIS85 4.3 42.5 1.0
CG A:HIS473 4.3 46.3 1.0
CD2 A:HIS419 4.4 45.3 1.0
CB A:ALA262 4.5 44.2 1.0
NE2 A:HIS419 4.5 44.8 1.0
CA A:HIS87 4.5 39.4 1.0
CH2 A:TRP128 4.5 38.2 1.0
CU A:CU617 4.7 47.2 1.0
CG A:HIS85 5.0 45.0 1.0

Copper binding site 3 out of 4 in 5nq7

Go back to Copper Binding Sites List in 5nq7
Copper binding site 3 out of 4 in the Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu619

b:45.9
occ:1.00
NE2 A:HIS419 2.0 44.8 1.0
NE2 A:HIS85 2.1 42.5 1.0
O A:HOH750 2.2 37.8 1.0
O2 A:PER621 2.7 45.9 1.0
CD2 A:HIS419 2.7 45.3 1.0
CD2 A:HIS85 2.9 42.9 1.0
CE1 A:HIS419 3.1 45.4 1.0
CE1 A:HIS85 3.1 45.3 1.0
ND1 A:HIS87 3.3 46.0 1.0
NE2 A:HIS421 3.3 43.0 1.0
CE1 A:HIS421 3.4 43.4 1.0
CD2 A:HIS421 3.6 43.1 1.0
CG A:HIS87 3.7 46.7 1.0
CU A:CU618 3.7 45.0 1.0
ND1 A:HIS421 3.8 43.5 1.0
CE1 A:HIS87 3.8 48.7 1.0
CA A:HIS87 3.8 39.4 1.0
CG A:HIS421 3.9 42.9 1.0
CG A:HIS419 3.9 45.0 1.0
ND1 A:HIS419 4.0 44.6 1.0
CB A:HIS87 4.1 43.0 1.0
CU A:CU617 4.1 47.2 1.0
CG A:HIS85 4.1 45.0 1.0
N A:GLY88 4.1 39.4 1.0
ND1 A:HIS85 4.1 45.7 1.0
O1 A:PER621 4.2 57.2 1.0
CD2 A:HIS87 4.3 49.1 1.0
NE2 A:HIS87 4.4 48.8 1.0
C A:HIS87 4.5 40.2 1.0
CA A:HIS421 4.7 45.9 1.0
O A:HOH748 4.7 40.0 1.0
O A:HOH827 4.8 51.5 1.0
CB A:HIS421 4.8 43.7 1.0
N A:HIS87 4.9 38.6 1.0

Copper binding site 4 out of 4 in 5nq7

Go back to Copper Binding Sites List in 5nq7
Copper binding site 4 out of 4 in the Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Laccases From Pycnoporus Sanguineus, Izoform I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu620

b:50.6
occ:1.00
ND1 A:HIS477 2.0 46.0 1.0
SG A:CYS472 2.1 49.4 1.0
ND1 A:HIS416 2.2 52.5 1.0
CG A:HIS477 3.0 49.3 1.0
CE1 A:HIS477 3.0 45.7 1.0
CG A:HIS416 3.1 52.5 1.0
CE1 A:HIS416 3.1 52.3 1.0
CB A:CYS472 3.2 44.1 1.0
CB A:HIS477 3.3 49.0 1.0
CB A:HIS416 3.4 54.5 1.0
CD2 A:PHE482 3.5 51.6 1.0
CD1 A:ILE474 3.5 44.9 1.0
CE2 A:PHE482 3.7 48.5 1.0
CB A:ILE474 3.9 44.8 1.0
CA A:HIS416 4.0 52.2 1.0
NE2 A:HIS477 4.1 48.0 1.0
CD2 A:HIS477 4.1 49.2 1.0
CG1 A:ILE474 4.2 44.1 1.0
NE2 A:HIS416 4.2 56.2 1.0
CD2 A:HIS416 4.2 54.7 1.0
CA A:CYS472 4.6 46.4 1.0
CG2 A:ILE474 4.8 45.3 1.0
CG A:PHE482 4.8 50.5 1.0
CD A:PRO417 4.9 46.1 1.0
CA A:HIS477 4.9 49.4 1.0
N A:ILE474 4.9 44.8 1.0
O A:GLY413 4.9 55.1 1.0
CA A:ILE474 5.0 44.0 1.0
O A:ILE474 5.0 43.0 1.0

Reference:

M.Orlikowska, M.De J Rostro-Alanis, A.Bujacz, C.Hernandez-Luna, R.Rubio, R.Parra, G.Bujacz. Structural Studies of Two Thermostable Laccases From the White-Rot Fungus Pycnoporus Sanguineus. Int. J. Biol. Macromol. V. 107 1629 2018.
ISSN: ISSN 1879-0003
PubMed: 29055703
DOI: 10.1016/J.IJBIOMAC.2017.10.024
Page generated: Sun Dec 13 11:19:04 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy