Atomistry » Copper » PDB 5lww-5nlo » 5mvo
Atomistry »
  Copper »
    PDB 5lww-5nlo »
      5mvo »

Copper in PDB 5mvo: Foxe P43212 Crystal Structure of Rhodopseudomonas Ferrooxidans SW2 Putative Iron Oxidase

Protein crystallography data

The structure of Foxe P43212 Crystal Structure of Rhodopseudomonas Ferrooxidans SW2 Putative Iron Oxidase, PDB code: 5mvo was solved by L.Pereira, I.H.Saraiva, A.S.Oliveira, C.Soares, R.O.Gomes, C.Frazao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.85 / 2.67
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 116.850, 116.850, 191.130, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 17.4

Other elements in 5mvo:

The structure of Foxe P43212 Crystal Structure of Rhodopseudomonas Ferrooxidans SW2 Putative Iron Oxidase also contains other interesting chemical elements:

Iron (Fe) 6 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Foxe P43212 Crystal Structure of Rhodopseudomonas Ferrooxidans SW2 Putative Iron Oxidase (pdb code 5mvo). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Foxe P43212 Crystal Structure of Rhodopseudomonas Ferrooxidans SW2 Putative Iron Oxidase, PDB code: 5mvo:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 5mvo

Go back to Copper Binding Sites List in 5mvo
Copper binding site 1 out of 2 in the Foxe P43212 Crystal Structure of Rhodopseudomonas Ferrooxidans SW2 Putative Iron Oxidase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Foxe P43212 Crystal Structure of Rhodopseudomonas Ferrooxidans SW2 Putative Iron Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu305

b:90.0
occ:1.00
OD1 B:ASP1 1.9 75.2 0.6
OD1 B:ASP1 1.9 86.6 0.4
O B:ASP1 2.0 93.9 0.4
O B:ASP1 2.1 92.5 0.6
N B:ASP1 2.2 87.2 0.6
C B:ASP1 2.6 90.3 0.6
CA B:ASP1 2.8 85.0 0.6
C B:ASP1 2.8 90.1 0.4
CA B:ASP1 2.9 85.6 0.4
CG B:ASP1 2.9 78.3 0.6
CG B:ASP1 3.0 80.3 0.4
CB B:ASP1 3.4 78.2 0.6
CB B:ASP1 3.5 80.5 0.4
N B:THR2 3.9 93.0 0.6
OD2 B:ASP1 4.0 71.0 0.6
N B:THR2 4.1 91.3 0.4
OD2 B:ASP1 4.1 77.5 0.4
OG1 B:THR2 4.1 0.1 0.4
N B:ASP1 4.2 85.0 0.4
CB B:THR2 4.3 89.6 0.6
CG2 B:THR2 4.3 80.5 0.6
CA B:THR2 4.7 94.8 0.6
CB B:THR2 4.7 93.3 0.4
CA B:THR2 4.9 92.6 0.4

Copper binding site 2 out of 2 in 5mvo

Go back to Copper Binding Sites List in 5mvo
Copper binding site 2 out of 2 in the Foxe P43212 Crystal Structure of Rhodopseudomonas Ferrooxidans SW2 Putative Iron Oxidase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Foxe P43212 Crystal Structure of Rhodopseudomonas Ferrooxidans SW2 Putative Iron Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu305

b:0.1
occ:1.00
OD1 C:ASP1 1.9 80.8 0.3
OD1 C:ASP1 1.9 0.8 0.7
N C:ASP1 2.0 95.7 0.3
O C:ASP1 2.1 1.0 0.7
O C:ASP1 2.1 0.5 0.3
CA C:ASP1 2.7 94.4 0.3
C C:ASP1 2.7 0.1 0.3
C C:ASP1 2.8 0.6 0.7
CG C:ASP1 2.9 82.8 0.3
CG C:ASP1 3.0 0.4 0.7
CB C:ASP1 3.3 85.5 0.3
CA C:ASP1 3.4 100.0 0.7
CB C:ASP1 3.7 95.1 0.7
CG2 C:THR2 3.7 0.7 0.7
OD2 C:ASP1 3.9 97.4 0.7
N C:THR2 3.9 0.3 0.7
OD2 C:ASP1 4.0 81.9 0.3
OG1 C:THR2 4.0 0.9 0.3
N C:THR2 4.1 0.1 0.3
CB C:THR2 4.5 0.6 0.7
OG1 C:THR2 4.6 0.4 0.7
CA C:THR2 4.7 0.1 0.7
N C:ASP1 4.8 0.1 0.7
CB C:THR2 4.9 0.8 0.3

Reference:

L.Pereira, I.H.Saraiva, R.Coelho, D.K.Newman, R.O.Louro, C.Frazao. Crystallization and Preliminary Crystallographic Studies of Foxe From Rhodobacter Ferrooxidans SW2, An Fe(II) Oxidoreductase Involved in Photoferrotrophy. Acta Crystallogr. Sect. F V. 68 1106 2012STRUCT. Biol. Cryst. Commun..
ISSN: ESSN 1744-3091
PubMed: 22949206
DOI: 10.1107/S174430911203271X
Page generated: Sun Dec 13 11:18:48 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy