Copper in PDB 5msz: Lytic Polysaccharide Monooxygenase AA15 From Thermobia Domestica in the Cu(I) State

The structure of Lytic Polysaccharide Monooxygenase AA15 From Thermobia Domestica in the Cu(I) State, PDB code: 5msz was solved by G.R.Hemsworth, F.Sabbadin, L.Ciano, B.Henrissat, P.Dupree, T.Tryfona, K.Besser, L.Elias, G.Pesante, Y.Li, A.Dowle, R.Bates, L.Gomez, R.Hallam, G.J.Davies, P.H.Walton, N.C.Bruce, S.Mcqueen-Mason, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.87 / 1.10
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.985, 56.868, 66.654, 90.00, 90.00, 90.00
R / Rfree (%)	13.3 / 15.4

The binding sites of Copper atom in the Lytic Polysaccharide Monooxygenase AA15 From Thermobia Domestica in the Cu(I) State (pdb code 5msz). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Lytic Polysaccharide Monooxygenase AA15 From Thermobia Domestica in the Cu(I) State, PDB code: 5msz:

Copper binding site 1 out of 1 in the Lytic Polysaccharide Monooxygenase AA15 From Thermobia Domestica in the Cu(I) State


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Lytic Polysaccharide Monooxygenase AA15 From Thermobia Domestica in the Cu(I) State within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu303 b:17.1 occ:1.00 NE2 A:HIS91 2.0 19.2 1.0 ND1 A:HIS1 2.0 17.5 1.0 N A:HIS1 2.2 14.3 1.0 OH A:TYR184 2.6 15.4 1.0 CG A:HIS1 2.9 15.6 1.0 CE1 A:HIS91 3.0 20.1 1.0 CD2 A:HIS91 3.0 18.8 1.0 CE1 A:HIS1 3.0 19.8 1.0 CA A:HIS1 3.1 14.1 1.0 CB A:HIS1 3.2 15.0 1.0 CZ A:TYR184 3.7 12.7 1.0 O A:HOH431 3.9 30.3 1.0 CB A:ALA89 4.0 22.4 1.0 ND1 A:HIS91 4.1 21.2 1.0 CD2 A:HIS1 4.1 16.6 1.0 NE2 A:HIS1 4.1 19.8 1.0 CG A:HIS91 4.1 19.7 1.0 OE1 A:GLU182 4.2 15.5 1.0 O A:ALA89 4.2 20.0 1.0 CE2 A:TYR184 4.3 12.5 1.0 C A:HIS1 4.5 13.5 1.0 CE1 A:TYR184 4.6 13.0 1.0 O A:HIS1 4.9 15.2 1.0 OE2 A:GLU182 4.9 16.7 1.0 CD A:GLU182 5.0 13.7 1.0

F.Sabbadin, G.R.Hemsworth, L.Ciano, B.Henrissat, P.Dupree, T.Tryfona, R.D.S.Marques, S.T.Sweeney, K.Besser, L.Elias, G.Pesante, Y.Li, A.A.Dowle, R.Bates, L.D.Gomez, R.Simister, G.J.Davies, P.H.Walton, N.C.Bruce, S.J.Mcqueen-Mason. An Ancient Family of Lytic Polysaccharide Monooxygenases with Roles in Arthropod Development and Biomass Digestion. Nat Commun V. 9 756 2018.
ISSN: ESSN 2041-1723
PubMed: 29472725
DOI: 10.1038/S41467-018-03142-X