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Copper in PDB 5kbm: Candida Albicans Superoxide Dismutase 5 (SOD5), D113N Mutant

Enzymatic activity of Candida Albicans Superoxide Dismutase 5 (SOD5), D113N Mutant

All present enzymatic activity of Candida Albicans Superoxide Dismutase 5 (SOD5), D113N Mutant:
1.15.1.1;

Protein crystallography data

The structure of Candida Albicans Superoxide Dismutase 5 (SOD5), D113N Mutant, PDB code: 5kbm was solved by A.Galaleldeen, R.L.Peterson, J.Villarreal, A.B.Taylor, P.J.Hart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.68 / 1.42
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 34.550, 39.450, 102.850, 90.00, 90.00, 90.00
R / Rfree (%) 21.7 / 24.7

Copper Binding Sites:

The binding sites of Copper atom in the Candida Albicans Superoxide Dismutase 5 (SOD5), D113N Mutant (pdb code 5kbm). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Candida Albicans Superoxide Dismutase 5 (SOD5), D113N Mutant, PDB code: 5kbm:

Copper binding site 1 out of 1 in 5kbm

Go back to Copper Binding Sites List in 5kbm
Copper binding site 1 out of 1 in the Candida Albicans Superoxide Dismutase 5 (SOD5), D113N Mutant


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Candida Albicans Superoxide Dismutase 5 (SOD5), D113N Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:30.4
occ:1.00
NE2 A:HIS77 1.9 23.5 1.0
ND1 A:HIS75 2.0 25.4 1.0
NE2 A:HIS153 2.0 24.7 1.0
CE1 A:HIS77 2.9 25.7 1.0
CE1 A:HIS75 2.9 26.4 1.0
CD2 A:HIS153 2.9 22.8 1.0
CD2 A:HIS77 3.0 21.5 1.0
CG A:HIS75 3.0 25.1 1.0
CE1 A:HIS153 3.1 25.9 1.0
NE2 A:HIS93 3.4 40.4 1.0
CB A:HIS75 3.4 23.7 1.0
CD2 A:HIS93 3.7 39.3 1.0
CB A:VAL151 3.9 18.6 1.0
ND1 A:HIS77 4.0 24.6 1.0
O A:VAL151 4.0 17.0 1.0
NE2 A:HIS75 4.0 29.6 1.0
N A:HIS75 4.0 19.6 1.0
CG A:HIS153 4.1 23.8 1.0
CG A:HIS77 4.1 21.2 1.0
CD2 A:HIS75 4.1 27.1 1.0
ND1 A:HIS153 4.1 25.0 1.0
CA A:HIS75 4.3 22.6 1.0
CG1 A:VAL151 4.3 19.5 1.0
CE1 A:HIS93 4.4 40.5 1.0
O A:HIS75 4.5 19.4 1.0
C A:VAL151 4.6 15.9 1.0
O A:HOH378 4.7 43.6 1.0
C A:HIS75 4.7 20.0 1.0
CA A:VAL151 4.7 16.0 1.0
C A:TYR74 4.8 20.1 1.0
CG A:HIS93 4.8 38.8 1.0
CG2 A:VAL151 4.8 18.8 1.0
N A:VAL151 5.0 16.4 1.0

Reference:

R.L.Peterson, A.Galaleldeen, J.Villarreal, A.B.Taylor, D.E.Cabelli, P.J.Hart, V.C.Culotta. The Phylogeny and Active Site Design of Eukaryotic Copper-Only Superoxide Dismutases. J.Biol.Chem. V. 291 20911 2016.
ISSN: ESSN 1083-351X
PubMed: 27535222
DOI: 10.1074/JBC.M116.748251
Page generated: Sun Dec 13 11:18:17 2020

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