Atomistry » Copper » PDB 5i0y-5lm8 » 5k5k
Atomistry »
  Copper »
    PDB 5i0y-5lm8 »
      5k5k »

Copper in PDB 5k5k: Crystal Structure of Laccasse From Thermus Thermophilus HB27 (Ascorbic Acid 10 Min)

Enzymatic activity of Crystal Structure of Laccasse From Thermus Thermophilus HB27 (Ascorbic Acid 10 Min)

All present enzymatic activity of Crystal Structure of Laccasse From Thermus Thermophilus HB27 (Ascorbic Acid 10 Min):
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Laccasse From Thermus Thermophilus HB27 (Ascorbic Acid 10 Min), PDB code: 5k5k was solved by A.Diaz-Vilchis, R.R.Ruiz-Arellano, E.Rosas-Benitez, E.Rudino-Pinera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.63 / 1.80
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 93.440, 109.860, 96.050, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 21.6

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Laccasse From Thermus Thermophilus HB27 (Ascorbic Acid 10 Min) (pdb code 5k5k). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Crystal Structure of Laccasse From Thermus Thermophilus HB27 (Ascorbic Acid 10 Min), PDB code: 5k5k:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 5k5k

Go back to Copper Binding Sites List in 5k5k
Copper binding site 1 out of 3 in the Crystal Structure of Laccasse From Thermus Thermophilus HB27 (Ascorbic Acid 10 Min)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Laccasse From Thermus Thermophilus HB27 (Ascorbic Acid 10 Min) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:18.1
occ:0.23
NE2 A:HIS398 1.9 8.9 1.0
NE2 A:HIS444 2.0 7.4 1.0
NE2 A:HIS137 2.2 25.0 1.0
CD2 A:HIS137 2.4 21.4 1.0
CE1 A:HIS398 2.5 7.1 1.0
CD2 A:HIS444 2.9 12.7 1.0
CE1 A:HIS444 2.9 7.1 1.0
CD2 A:HIS398 3.1 7.7 1.0
CD2 A:HIS95 3.4 10.6 0.2
CE1 A:HIS137 3.4 37.3 1.0
NE2 A:HIS95 3.6 12.1 0.2
CG A:HIS137 3.6 21.4 1.0
CD2 A:HIS95 3.6 10.3 0.8
ND1 A:HIS398 3.8 8.6 1.0
NE2 A:HIS95 3.9 13.4 0.8
ND1 A:HIS444 4.0 7.3 1.0
CG A:HIS444 4.0 10.0 1.0
CD2 A:HIS396 4.0 11.1 1.0
CG A:HIS398 4.1 6.7 1.0
CG A:HIS95 4.1 12.2 0.2
ND1 A:HIS137 4.1 24.1 1.0
CG A:HIS95 4.2 11.7 0.8
CE1 A:HIS95 4.4 11.3 0.2
CG2 A:VAL442 4.4 7.8 1.0
OE2 A:GLU451 4.5 7.8 0.5
NE2 A:HIS396 4.5 12.0 1.0
ND1 A:HIS95 4.6 10.3 0.2
CE1 A:HIS95 4.6 9.6 0.8
OE1 A:GLU451 4.8 19.7 0.5
CD A:GLU451 4.8 8.7 0.5
CB A:HIS137 4.8 15.1 1.0
ND1 A:HIS95 4.8 9.8 0.8
CB A:HIS95 4.8 11.4 0.2
CB A:HIS95 4.9 11.3 0.8

Copper binding site 2 out of 3 in 5k5k

Go back to Copper Binding Sites List in 5k5k
Copper binding site 2 out of 3 in the Crystal Structure of Laccasse From Thermus Thermophilus HB27 (Ascorbic Acid 10 Min)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Laccasse From Thermus Thermophilus HB27 (Ascorbic Acid 10 Min) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:15.8
occ:1.00
ND1 A:HIS97 1.9 11.7 1.0
NE2 A:HIS446 2.1 7.4 1.0
NE2 A:HIS135 2.1 10.7 1.0
CE1 A:HIS97 2.9 17.4 1.0
CD2 A:HIS135 2.9 7.9 1.0
CE1 A:HIS446 2.9 4.4 1.0
CG A:HIS97 3.0 11.4 1.0
CD2 A:HIS446 3.2 10.2 1.0
CE1 A:HIS135 3.2 14.3 1.0
CB A:HIS97 3.4 8.0 1.0
CZ2 A:TRP133 3.5 10.0 1.0
CD2 A:HIS95 3.6 10.6 0.2
CD2 A:HIS95 3.7 10.3 0.8
CE2 A:TRP133 3.8 5.2 1.0
NE1 A:TRP133 3.9 7.5 1.0
NE2 A:HIS97 4.0 9.0 1.0
CD2 A:HIS97 4.1 10.9 1.0
NE2 A:HIS95 4.1 12.1 0.2
ND1 A:HIS446 4.1 7.1 1.0
CG A:HIS135 4.1 11.5 1.0
ND1 A:HIS135 4.2 10.5 1.0
CH2 A:TRP133 4.2 6.6 1.0
CG A:HIS446 4.2 10.8 1.0
NE2 A:HIS95 4.4 13.4 0.8
CD2 A:HIS396 4.4 11.1 1.0
NE2 A:HIS396 4.4 12.0 1.0
CA A:HIS97 4.7 9.0 1.0
CD2 A:TRP133 4.8 4.7 1.0
CG A:HIS95 4.8 12.2 0.2
CG A:HIS95 4.9 11.7 0.8
CD1 A:TRP133 4.9 5.3 1.0

Copper binding site 3 out of 3 in 5k5k

Go back to Copper Binding Sites List in 5k5k
Copper binding site 3 out of 3 in the Crystal Structure of Laccasse From Thermus Thermophilus HB27 (Ascorbic Acid 10 Min)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Laccasse From Thermus Thermophilus HB27 (Ascorbic Acid 10 Min) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu503

b:12.0
occ:0.74
ND1 A:HIS393 2.0 9.3 1.0
ND1 A:HIS450 2.1 9.2 1.0
SG A:CYS445 2.2 10.0 1.0
CE1 A:HIS393 2.9 13.4 1.0
CG A:HIS450 3.0 6.7 1.0
CE1 A:HIS450 3.0 12.7 1.0
CG A:HIS393 3.1 8.7 1.0
CB A:CYS445 3.2 8.2 1.0
CB A:HIS450 3.3 6.5 1.0
SD A:MET455 3.4 8.4 0.3
CB A:HIS393 3.6 7.5 1.0
SD A:MET455 3.7 15.8 0.7
CE A:MET455 3.8 9.3 0.3
CA A:HIS393 3.9 8.0 1.0
CB A:ILE447 4.0 9.2 1.0
NE2 A:HIS393 4.1 12.5 1.0
CD1 A:ILE447 4.1 10.9 1.0
NE2 A:HIS450 4.2 6.8 1.0
CD2 A:HIS450 4.2 7.3 1.0
CD2 A:HIS393 4.2 7.7 1.0
O A:ASP392 4.4 7.8 1.0
CE A:MET455 4.5 7.5 0.7
CG1 A:ILE447 4.5 8.0 1.0
CD A:PRO394 4.6 4.8 1.0
CA A:CYS445 4.6 6.2 1.0
O A:ILE447 4.7 8.8 1.0
CG2 A:ILE447 4.7 11.2 1.0
N A:ILE447 4.8 8.3 1.0
CA A:HIS450 4.9 9.2 1.0
CG A:MET455 4.9 11.8 0.3
C A:HIS393 4.9 10.2 1.0
CA A:ILE447 4.9 8.9 1.0
N A:HIS393 5.0 8.4 1.0
N A:PRO394 5.0 8.8 1.0

Reference:

A.Diaz-Vilchis, R.R.Ruiz-Arellano, E.Rosas-Benitez, V.Stojanoff, E.Rudino-Pinera. Preserving Metallic Sites Affected By Radiation Damage: the CUT2 Case in Thermus Thermophilus Multicopper Oxidase To Be Published.
Page generated: Sun Dec 13 11:18:13 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy