Atomistry » Copper » PDB 5i26-5luf » 5i6p
Atomistry »
  Copper »
    PDB 5i26-5luf »
      5i6p »

Copper in PDB 5i6p: Crystal Structure of Copper Nitrite Reductase at 100K After 27.60 Mgy

Enzymatic activity of Crystal Structure of Copper Nitrite Reductase at 100K After 27.60 Mgy

All present enzymatic activity of Crystal Structure of Copper Nitrite Reductase at 100K After 27.60 Mgy:
1.7.2.1;

Protein crystallography data

The structure of Crystal Structure of Copper Nitrite Reductase at 100K After 27.60 Mgy, PDB code: 5i6p was solved by S.Horrell, M.A.Hough, R.W.Strange, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.60 / 1.56
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 95.303, 95.303, 95.303, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 19.5

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Copper Nitrite Reductase at 100K After 27.60 Mgy (pdb code 5i6p). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Copper Nitrite Reductase at 100K After 27.60 Mgy, PDB code: 5i6p:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 5i6p

Go back to Copper Binding Sites List in 5i6p
Copper binding site 1 out of 2 in the Crystal Structure of Copper Nitrite Reductase at 100K After 27.60 Mgy


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Copper Nitrite Reductase at 100K After 27.60 Mgy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:23.1
occ:1.00
ND1 A:HIS95 2.0 20.1 1.0
ND1 A:HIS145 2.0 23.7 1.0
SG A:CYS136 2.3 22.0 1.0
SD A:MET150 2.4 26.4 1.0
CE1 A:HIS145 2.9 22.4 1.0
CE1 A:HIS95 3.0 21.5 1.0
CG A:HIS95 3.1 20.5 1.0
CG A:HIS145 3.1 22.1 1.0
CB A:CYS136 3.2 21.3 1.0
CE A:MET150 3.2 28.4 1.0
CB A:HIS95 3.5 20.5 1.0
CB A:HIS145 3.5 21.7 1.0
CG A:MET150 3.8 27.0 1.0
CA A:HIS95 3.9 19.8 1.0
NE2 A:HIS145 4.1 23.8 1.0
NE2 A:HIS95 4.1 21.0 1.0
CD2 A:HIS145 4.2 23.9 1.0
CD2 A:HIS95 4.2 21.5 1.0
CG A:PRO138 4.2 27.1 1.0
O A:LEU94 4.3 23.7 1.0
CB A:MET150 4.3 22.5 1.0
SD A:MET62 4.5 29.6 1.0
CA A:CYS136 4.6 20.5 1.0
CD A:PRO138 4.6 23.5 1.0
N A:ASN96 4.7 20.2 1.0
CA A:HIS145 4.7 20.4 1.0
N A:HIS95 4.9 21.7 1.0
C A:HIS95 4.9 21.9 1.0
C A:LEU94 5.0 23.7 1.0
CB A:MET62 5.0 26.1 1.0

Copper binding site 2 out of 2 in 5i6p

Go back to Copper Binding Sites List in 5i6p
Copper binding site 2 out of 2 in the Crystal Structure of Copper Nitrite Reductase at 100K After 27.60 Mgy


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Copper Nitrite Reductase at 100K After 27.60 Mgy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:22.3
occ:1.00
NE2 A:HIS100 2.0 19.5 1.0
NE2 A:HIS135 2.0 19.9 1.0
CE1 A:HIS100 2.9 19.4 1.0
CD2 A:HIS135 3.0 19.7 1.0
CE1 A:HIS135 3.1 21.0 1.0
CD2 A:HIS100 3.1 19.8 1.0
OD2 A:ASP98 3.8 29.3 0.5
ND1 A:HIS100 4.1 20.4 1.0
ND1 A:HIS135 4.2 19.7 1.0
CG A:HIS135 4.2 19.4 1.0
CG A:HIS100 4.2 17.7 1.0
CG A:ASP98 4.5 25.6 0.5
O A:HOH770 4.5 20.6 0.3
OD1 A:ASP98 4.9 27.1 0.5

Reference:

S.Horrell, S.V.Antonyuk, R.R.Eady, S.S.Hasnain, M.A.Hough, R.W.Strange. Serial Crystallography Captures Enzyme Catalysis in Copper Nitrite Reductase at Atomic Resolution From One Crystal. Iucrj V. 3 271 2016.
ISSN: ESSN 2052-2525
PubMed: 27437114
DOI: 10.1107/S205225251600823X
Page generated: Sun Dec 13 11:17:58 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy