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Copper in PDB 5i0y: Copper-Bound E46Q Variant of Uropathogenic Escherichia Coli Strain F11 Fetp

Protein crystallography data

The structure of Copper-Bound E46Q Variant of Uropathogenic Escherichia Coli Strain F11 Fetp, PDB code: 5i0y was solved by A.C.Chan, M.E.Murphy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.65 / 1.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 83.160, 36.540, 101.000, 90.00, 106.52, 90.00
R / Rfree (%) 18.8 / 21.4

Copper Binding Sites:

The binding sites of Copper atom in the Copper-Bound E46Q Variant of Uropathogenic Escherichia Coli Strain F11 Fetp (pdb code 5i0y). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Copper-Bound E46Q Variant of Uropathogenic Escherichia Coli Strain F11 Fetp, PDB code: 5i0y:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 5i0y

Go back to Copper Binding Sites List in 5i0y
Copper binding site 1 out of 3 in the Copper-Bound E46Q Variant of Uropathogenic Escherichia Coli Strain F11 Fetp


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Copper-Bound E46Q Variant of Uropathogenic Escherichia Coli Strain F11 Fetp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:8.1
occ:0.50
CU A:CU201 0.0 8.1 0.5
CU A:CU201 0.7 8.2 0.5
SD A:MET90 1.8 14.1 1.0
NE2 A:HIS44 2.2 11.5 1.0
NE2 B:HIS127 2.3 9.7 1.0
NE2 A:HIS97 2.3 9.7 1.0
CE A:MET90 2.9 15.0 1.0
CE1 A:HIS44 2.9 11.6 1.0
CG A:MET90 3.1 11.8 1.0
CD2 B:HIS127 3.2 9.9 1.0
CE1 B:HIS127 3.2 10.0 1.0
CE1 A:HIS97 3.3 10.6 1.0
CD2 A:HIS97 3.3 9.5 1.0
CB A:MET90 3.3 11.2 1.0
CD2 A:HIS44 3.3 11.8 1.0
ND1 A:HIS44 4.1 11.5 1.0
CA A:GLY99 4.3 9.2 1.0
CG A:HIS44 4.3 11.4 1.0
ND1 B:HIS127 4.4 10.2 1.0
ND1 A:HIS97 4.4 10.5 1.0
CG B:HIS127 4.4 10.2 1.0
CG A:HIS97 4.4 9.1 1.0
CD1 A:ILE27 4.5 12.7 1.0
C A:GLY99 4.5 9.2 1.0
NE2 A:GLN46 4.6 21.2 1.0
N A:GLY99 4.6 8.4 1.0
CG1 A:ILE27 4.6 12.3 1.0
CA A:MET90 4.8 10.1 1.0
O A:GLY99 4.9 9.2 1.0
N A:ALA100 4.9 9.8 1.0
CG A:GLN46 5.0 17.3 1.0

Copper binding site 2 out of 3 in 5i0y

Go back to Copper Binding Sites List in 5i0y
Copper binding site 2 out of 3 in the Copper-Bound E46Q Variant of Uropathogenic Escherichia Coli Strain F11 Fetp


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Copper-Bound E46Q Variant of Uropathogenic Escherichia Coli Strain F11 Fetp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:8.2
occ:0.50
CU A:CU201 0.0 8.2 0.5
CU A:CU201 0.7 8.1 0.5
NE2 A:HIS97 1.8 9.7 1.0
NE2 B:HIS127 2.0 9.7 1.0
NE2 A:HIS44 2.1 11.5 1.0
SD A:MET90 2.5 14.1 1.0
CE1 A:HIS97 2.7 10.6 1.0
CE1 B:HIS127 2.8 10.0 1.0
CD2 A:HIS97 3.0 9.5 1.0
CD2 A:HIS44 3.0 11.8 1.0
CE1 A:HIS44 3.1 11.6 1.0
CD2 B:HIS127 3.2 9.9 1.0
CE A:MET90 3.5 15.0 1.0
CB A:MET90 3.6 11.2 1.0
CG A:MET90 3.7 11.8 1.0
NE2 A:GLN46 3.9 21.2 1.0
ND1 A:HIS97 3.9 10.5 1.0
CG A:HIS97 4.1 9.1 1.0
ND1 B:HIS127 4.1 10.2 1.0
CG A:HIS44 4.2 11.4 1.0
ND1 A:HIS44 4.2 11.5 1.0
CG B:HIS127 4.3 10.2 1.0
CD A:GLN46 4.4 17.8 1.0
CG A:GLN46 4.5 17.3 1.0
CA A:GLY99 4.5 9.2 1.0
CG1 A:ILE27 4.6 12.3 1.0
CD1 A:ILE27 4.7 12.7 1.0
N A:GLY99 4.8 8.4 1.0
C A:GLY99 4.9 9.2 1.0

Copper binding site 3 out of 3 in 5i0y

Go back to Copper Binding Sites List in 5i0y
Copper binding site 3 out of 3 in the Copper-Bound E46Q Variant of Uropathogenic Escherichia Coli Strain F11 Fetp


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Copper-Bound E46Q Variant of Uropathogenic Escherichia Coli Strain F11 Fetp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu202

b:9.7
occ:1.00
NE2 B:HIS97 2.0 8.9 1.0
NE2 B:HIS44 2.0 9.7 1.0
NE2 A:HIS127 2.1 9.0 1.0
SD B:MET90 2.3 11.7 1.0
CE1 B:HIS97 2.9 8.8 1.0
CE1 B:HIS44 2.9 9.8 1.0
CE1 A:HIS127 3.0 8.9 1.0
CD2 B:HIS44 3.1 10.0 1.0
CD2 B:HIS97 3.1 8.0 1.0
CD2 A:HIS127 3.2 8.9 1.0
CE B:MET90 3.2 12.6 1.0
CG B:MET90 3.3 10.2 1.0
CB B:MET90 3.4 9.8 1.0
NE2 B:GLN46 4.1 17.5 1.0
ND1 B:HIS44 4.1 9.7 1.0
ND1 B:HIS97 4.1 9.1 1.0
CG B:HIS44 4.2 9.7 1.0
ND1 A:HIS127 4.2 9.2 1.0
CG B:HIS97 4.2 8.3 1.0
CG A:HIS127 4.3 9.0 1.0
CA B:GLY99 4.5 8.6 1.0
CD1 B:ILE27 4.6 11.2 1.0
CG1 B:ILE27 4.6 10.9 1.0
C B:GLY99 4.7 8.4 1.0
N B:GLY99 4.7 7.9 1.0
CD B:GLN46 4.8 15.6 1.0
CG B:GLN46 4.8 14.9 1.0
CA B:MET90 4.9 9.3 1.0
N B:ALA100 5.0 9.0 1.0

Reference:

A.C.Chan, D.Koch, G.Grass, M.E.Murphy, D.H.Nies. Metal-Handling and Receptor Recognition By Fetp and P19 From Uropathogenic Escherichia Coli and Campylobacter Jejuni To Be Published.
Page generated: Sun Dec 13 11:17:52 2020

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