Copper in PDB 5i0x: Copper-Bound M90I Variant of Uropathogenic Escherichia Coli Strain F11 Fetp
Protein crystallography data
The structure of Copper-Bound M90I Variant of Uropathogenic Escherichia Coli Strain F11 Fetp, PDB code: 5i0x
was solved by
A.C.Chan,
M.E.Murphy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
66.03 /
1.50
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
49.155,
51.612,
66.136,
90.00,
93.30,
90.00
|
R / Rfree (%)
|
17.6 /
20.8
|
Copper Binding Sites:
The binding sites of Copper atom in the Copper-Bound M90I Variant of Uropathogenic Escherichia Coli Strain F11 Fetp
(pdb code 5i0x). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the
Copper-Bound M90I Variant of Uropathogenic Escherichia Coli Strain F11 Fetp, PDB code: 5i0x:
Jump to Copper binding site number:
1;
2;
3;
Copper binding site 1 out
of 3 in 5i0x
Go back to
Copper Binding Sites List in 5i0x
Copper binding site 1 out
of 3 in the Copper-Bound M90I Variant of Uropathogenic Escherichia Coli Strain F11 Fetp
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Copper-Bound M90I Variant of Uropathogenic Escherichia Coli Strain F11 Fetp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu201
b:12.5
occ:1.00
|
NE2
|
A:HIS44
|
1.9
|
11.7
|
1.0
|
NE2
|
A:HIS97
|
2.0
|
12.7
|
1.0
|
NE2
|
B:HIS127
|
2.1
|
13.0
|
1.0
|
OE1
|
A:GLU46
|
2.3
|
13.2
|
0.5
|
OE2
|
A:GLU46
|
2.7
|
13.2
|
0.5
|
CD
|
A:GLU46
|
2.8
|
13.0
|
0.5
|
OE2
|
A:GLU46
|
2.9
|
13.3
|
0.5
|
CD2
|
A:HIS44
|
2.9
|
11.6
|
1.0
|
CE1
|
B:HIS127
|
2.9
|
14.6
|
1.0
|
CE1
|
A:HIS44
|
2.9
|
12.1
|
1.0
|
CD2
|
A:HIS97
|
3.0
|
11.9
|
1.0
|
CE1
|
A:HIS97
|
3.0
|
13.2
|
1.0
|
CD2
|
B:HIS127
|
3.2
|
14.5
|
1.0
|
CD
|
A:GLU46
|
3.4
|
12.9
|
0.5
|
CG
|
A:GLU46
|
3.5
|
12.3
|
0.5
|
CD1
|
A:ILE90
|
3.6
|
11.8
|
1.0
|
ND1
|
A:HIS44
|
4.1
|
12.2
|
1.0
|
CG
|
A:HIS44
|
4.1
|
11.7
|
1.0
|
ND1
|
A:HIS97
|
4.1
|
13.4
|
1.0
|
CG2
|
A:ILE90
|
4.1
|
12.4
|
1.0
|
CG
|
A:HIS97
|
4.1
|
11.7
|
1.0
|
ND1
|
B:HIS127
|
4.1
|
14.6
|
1.0
|
CG
|
B:HIS127
|
4.3
|
14.6
|
1.0
|
CG
|
A:GLU46
|
4.3
|
12.7
|
0.5
|
CB
|
A:ILE90
|
4.4
|
11.2
|
1.0
|
OE1
|
A:GLU46
|
4.5
|
14.4
|
0.5
|
CG1
|
A:ILE90
|
4.6
|
11.5
|
1.0
|
CB
|
A:GLU46
|
4.8
|
11.5
|
0.5
|
O
|
A:HOH321
|
4.9
|
36.6
|
1.0
|
CA
|
A:GLY99
|
5.0
|
10.0
|
1.0
|
|
Copper binding site 2 out
of 3 in 5i0x
Go back to
Copper Binding Sites List in 5i0x
Copper binding site 2 out
of 3 in the Copper-Bound M90I Variant of Uropathogenic Escherichia Coli Strain F11 Fetp
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Copper-Bound M90I Variant of Uropathogenic Escherichia Coli Strain F11 Fetp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu202
b:11.4
occ:1.00
|
NE2
|
B:HIS97
|
2.0
|
9.9
|
1.0
|
NE2
|
B:HIS44
|
2.0
|
9.8
|
1.0
|
NE2
|
A:HIS127
|
2.1
|
11.8
|
1.0
|
OE2
|
B:GLU46
|
2.2
|
11.8
|
0.5
|
OE1
|
B:GLU46
|
2.7
|
11.7
|
0.5
|
CD
|
B:GLU46
|
2.8
|
11.8
|
0.5
|
CD2
|
B:HIS44
|
2.9
|
9.8
|
1.0
|
CE1
|
A:HIS127
|
2.9
|
12.9
|
1.0
|
CE1
|
B:HIS97
|
3.0
|
10.4
|
1.0
|
CD2
|
B:HIS97
|
3.0
|
10.1
|
1.0
|
OE2
|
B:GLU46
|
3.0
|
11.5
|
0.5
|
CE1
|
B:HIS44
|
3.1
|
10.0
|
1.0
|
CD2
|
A:HIS127
|
3.2
|
12.1
|
1.0
|
CD1
|
B:ILE90
|
3.6
|
11.1
|
1.0
|
CD
|
B:GLU46
|
3.6
|
10.8
|
0.5
|
CG
|
B:GLU46
|
3.7
|
10.6
|
0.5
|
CG2
|
B:ILE90
|
4.0
|
10.3
|
1.0
|
CG
|
B:HIS44
|
4.1
|
9.7
|
1.0
|
ND1
|
B:HIS97
|
4.1
|
11.1
|
1.0
|
ND1
|
A:HIS127
|
4.1
|
12.8
|
1.0
|
CG
|
B:HIS97
|
4.1
|
10.1
|
1.0
|
ND1
|
B:HIS44
|
4.1
|
10.2
|
1.0
|
CG
|
A:HIS127
|
4.3
|
12.4
|
1.0
|
CG
|
B:GLU46
|
4.3
|
11.4
|
0.5
|
CB
|
B:ILE90
|
4.3
|
9.6
|
1.0
|
CG1
|
B:ILE90
|
4.5
|
10.2
|
1.0
|
OE1
|
B:GLU46
|
4.5
|
13.1
|
0.5
|
O
|
B:HOH314
|
4.7
|
28.3
|
1.0
|
SD
|
B:MET29
|
4.9
|
14.9
|
1.0
|
CB
|
B:GLU46
|
5.0
|
10.1
|
0.5
|
|
Copper binding site 3 out
of 3 in 5i0x
Go back to
Copper Binding Sites List in 5i0x
Copper binding site 3 out
of 3 in the Copper-Bound M90I Variant of Uropathogenic Escherichia Coli Strain F11 Fetp
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Copper-Bound M90I Variant of Uropathogenic Escherichia Coli Strain F11 Fetp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu201
b:14.4
occ:0.75
|
ND1
|
B:HIS115
|
2.0
|
13.6
|
1.0
|
OD1
|
B:ASP142
|
2.1
|
16.1
|
1.0
|
O
|
B:HOH349
|
2.7
|
32.8
|
1.0
|
CG
|
B:HIS115
|
2.9
|
13.1
|
1.0
|
CE1
|
B:HIS115
|
3.0
|
15.2
|
1.0
|
CG
|
B:ASP142
|
3.0
|
14.9
|
1.0
|
CB
|
B:HIS115
|
3.2
|
12.2
|
1.0
|
OD2
|
B:ASP142
|
3.2
|
17.2
|
1.0
|
CA
|
B:HIS115
|
3.9
|
11.2
|
1.0
|
CD2
|
B:HIS115
|
4.1
|
13.6
|
1.0
|
NE2
|
B:HIS115
|
4.1
|
14.1
|
1.0
|
CB
|
B:ASP142
|
4.4
|
14.3
|
1.0
|
O
|
B:HOH447
|
4.5
|
31.6
|
1.0
|
O
|
B:PHE141
|
4.8
|
12.7
|
1.0
|
C
|
B:HIS115
|
4.9
|
11.9
|
1.0
|
CA
|
B:ASP142
|
4.9
|
13.0
|
1.0
|
C
|
B:PHE141
|
4.9
|
12.8
|
1.0
|
N
|
B:HIS115
|
4.9
|
10.3
|
1.0
|
N
|
B:ASP142
|
4.9
|
12.4
|
1.0
|
|
Reference:
A.C.Chan,
D.Koch,
G.Grass,
M.E.Murphy,
D.H.Nies.
Metal-Handling and Receptor Recognition By Fetp and P19 From Uropathogenic Escherichia Coli and Campylobacter Jejuni To Be Published.
Page generated: Wed Jul 31 04:11:27 2024
|