Copper in PDB 5i0w: Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions
Protein crystallography data
The structure of Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions, PDB code: 5i0w
was solved by
A.C.Chan,
M.E.Murphy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
1.55
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
53.911,
73.229,
74.929,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.7 /
20.9
|
Other elements in 5i0w:
The structure of Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions also contains other interesting chemical elements:
Copper Binding Sites:
The binding sites of Copper atom in the Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions
(pdb code 5i0w). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the
Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions, PDB code: 5i0w:
Jump to Copper binding site number:
1;
2;
3;
Copper binding site 1 out
of 3 in 5i0w
Go back to
Copper Binding Sites List in 5i0w
Copper binding site 1 out
of 3 in the Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu202
b:10.8
occ:0.50
|
CU
|
A:CU1202
|
0.0
|
10.8
|
0.5
|
CU
|
A:CU1202
|
0.8
|
14.0
|
0.5
|
SD
|
A:MET88
|
2.0
|
15.3
|
1.0
|
NE2
|
A:HIS42
|
2.1
|
14.0
|
1.0
|
NE2
|
B:HIS132
|
2.2
|
14.7
|
1.0
|
NE2
|
A:HIS95
|
2.3
|
14.1
|
1.0
|
CE1
|
A:HIS42
|
2.8
|
14.7
|
1.0
|
CG
|
A:MET88
|
3.0
|
14.9
|
1.0
|
CD2
|
B:HIS132
|
3.1
|
15.3
|
1.0
|
CE
|
A:MET88
|
3.2
|
15.0
|
1.0
|
CD2
|
A:HIS42
|
3.2
|
14.4
|
1.0
|
CE1
|
A:HIS95
|
3.2
|
15.8
|
1.0
|
CE1
|
B:HIS132
|
3.2
|
14.6
|
1.0
|
CD2
|
A:HIS95
|
3.3
|
14.0
|
1.0
|
ND1
|
A:HIS42
|
4.1
|
15.2
|
1.0
|
CA
|
A:GLY97
|
4.2
|
13.3
|
1.0
|
OE2
|
A:GLU44
|
4.2
|
18.5
|
1.0
|
CG
|
A:HIS42
|
4.2
|
14.8
|
1.0
|
CG
|
B:HIS132
|
4.4
|
14.3
|
1.0
|
ND1
|
B:HIS132
|
4.4
|
14.6
|
1.0
|
ND1
|
A:HIS95
|
4.4
|
15.6
|
1.0
|
CG1
|
A:ILE25
|
4.4
|
16.7
|
0.5
|
CB
|
A:MET88
|
4.4
|
13.6
|
1.0
|
CG
|
A:HIS95
|
4.4
|
13.3
|
1.0
|
CD1
|
A:ILE25
|
4.5
|
17.3
|
0.5
|
N
|
A:GLY97
|
4.7
|
12.6
|
1.0
|
C
|
A:GLY97
|
4.7
|
13.8
|
1.0
|
CG
|
A:GLU44
|
4.8
|
17.8
|
1.0
|
CD
|
A:GLU44
|
4.8
|
19.1
|
1.0
|
|
Copper binding site 2 out
of 3 in 5i0w
Go back to
Copper Binding Sites List in 5i0w
Copper binding site 2 out
of 3 in the Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu202
b:14.0
occ:0.50
|
CU
|
A:CU1202
|
0.0
|
14.0
|
0.5
|
CU
|
A:CU1202
|
0.8
|
10.8
|
0.5
|
NE2
|
A:HIS95
|
1.9
|
14.1
|
1.0
|
NE2
|
A:HIS42
|
2.0
|
14.0
|
1.0
|
NE2
|
B:HIS132
|
2.0
|
14.7
|
1.0
|
SD
|
A:MET88
|
2.7
|
15.3
|
1.0
|
CE1
|
A:HIS95
|
2.7
|
15.8
|
1.0
|
CE1
|
B:HIS132
|
2.8
|
14.6
|
1.0
|
CD2
|
A:HIS42
|
2.9
|
14.4
|
1.0
|
CD2
|
A:HIS95
|
3.0
|
14.0
|
1.0
|
CE1
|
A:HIS42
|
3.1
|
14.7
|
1.0
|
CD2
|
B:HIS132
|
3.2
|
15.3
|
1.0
|
OE2
|
A:GLU44
|
3.5
|
18.5
|
1.0
|
CG
|
A:MET88
|
3.5
|
14.9
|
1.0
|
CE
|
A:MET88
|
3.9
|
15.0
|
1.0
|
ND1
|
A:HIS95
|
3.9
|
15.6
|
1.0
|
ND1
|
B:HIS132
|
4.1
|
14.6
|
1.0
|
CG
|
A:HIS95
|
4.1
|
13.3
|
1.0
|
CG
|
A:HIS42
|
4.1
|
14.8
|
1.0
|
ND1
|
A:HIS42
|
4.1
|
15.2
|
1.0
|
CD
|
A:GLU44
|
4.2
|
19.1
|
1.0
|
CG
|
B:HIS132
|
4.2
|
14.3
|
1.0
|
CG
|
A:GLU44
|
4.3
|
17.8
|
1.0
|
CA
|
A:GLY97
|
4.4
|
13.3
|
1.0
|
CG1
|
A:ILE25
|
4.4
|
16.7
|
0.5
|
CD1
|
A:ILE25
|
4.7
|
17.3
|
0.5
|
O
|
A:HOH307
|
4.8
|
26.5
|
1.0
|
CB
|
A:MET88
|
4.9
|
13.6
|
1.0
|
N
|
A:GLY97
|
4.9
|
12.6
|
1.0
|
|
Copper binding site 3 out
of 3 in 5i0w
Go back to
Copper Binding Sites List in 5i0w
Copper binding site 3 out
of 3 in the Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions
 Mono view
 Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Iron and Copper-Bound P19 From Campylobacter Jejuni Under Reducing Conditions within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu204
b:13.4
occ:1.00
|
NE2
|
B:HIS42
|
2.0
|
11.1
|
1.0
|
NE2
|
B:HIS95
|
2.1
|
11.3
|
1.0
|
NE2
|
A:HIS132
|
2.1
|
12.7
|
1.0
|
SD
|
B:MET88
|
2.3
|
13.0
|
1.0
|
CE1
|
A:HIS132
|
3.0
|
12.5
|
1.0
|
CE1
|
B:HIS42
|
3.0
|
11.4
|
1.0
|
CE1
|
B:HIS95
|
3.0
|
12.9
|
1.0
|
CD2
|
B:HIS42
|
3.0
|
11.7
|
1.0
|
CD2
|
B:HIS95
|
3.1
|
11.8
|
1.0
|
CG
|
B:MET88
|
3.2
|
12.0
|
1.0
|
CD2
|
A:HIS132
|
3.2
|
13.7
|
1.0
|
CE
|
B:MET88
|
3.4
|
14.0
|
1.0
|
OE2
|
B:GLU44
|
4.0
|
15.7
|
1.0
|
ND1
|
B:HIS42
|
4.1
|
11.6
|
1.0
|
CG
|
B:HIS42
|
4.1
|
11.5
|
1.0
|
ND1
|
B:HIS95
|
4.1
|
13.2
|
1.0
|
CA
|
B:GLY97
|
4.2
|
11.7
|
1.0
|
ND1
|
A:HIS132
|
4.2
|
13.4
|
1.0
|
CG
|
B:HIS95
|
4.2
|
11.3
|
1.0
|
CD1
|
B:ILE25
|
4.3
|
15.1
|
1.0
|
CG
|
A:HIS132
|
4.3
|
13.4
|
1.0
|
CG1
|
B:ILE25
|
4.4
|
14.9
|
1.0
|
CB
|
B:MET88
|
4.6
|
11.8
|
1.0
|
CG
|
B:GLU44
|
4.6
|
14.2
|
1.0
|
CD
|
B:GLU44
|
4.7
|
16.6
|
1.0
|
N
|
B:GLY97
|
4.7
|
11.1
|
1.0
|
C
|
B:GLY97
|
4.8
|
12.0
|
1.0
|
|
Reference:
A.C.Chan,
D.Koch,
G.Grass,
M.E.Murphy,
D.H.Nies.
Metal-Handling and Receptor Recognition By Fetp and P19 From Uropathogenic Escherichia Coli and Campylobacter Jejuni To Be Published.
Page generated: Wed Jul 31 04:11:25 2024
|