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Copper in PDB 5hli: Structure of Disulfide Formed Abfr

Protein crystallography data

The structure of Structure of Disulfide Formed Abfr, PDB code: 5hli was solved by G.Liu, X.Liu, J.Gan, C.-G.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.04 / 2.05
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.534, 51.686, 85.935, 90.00, 103.73, 90.00
R / Rfree (%) 21.3 / 24.6

Other elements in 5hli:

The structure of Structure of Disulfide Formed Abfr also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Structure of Disulfide Formed Abfr (pdb code 5hli). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Structure of Disulfide Formed Abfr, PDB code: 5hli:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 5hli

Go back to Copper Binding Sites List in 5hli
Copper binding site 1 out of 2 in the Structure of Disulfide Formed Abfr


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of Disulfide Formed Abfr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:58.8
occ:1.00
N A:SER-1 2.5 64.8 1.0
OG A:SER-1 2.7 64.2 1.0
N A:GLN-2 2.8 63.9 1.0
O A:HOH395 2.9 47.9 1.0
C A:GLN-2 3.3 63.9 1.0
CB A:SER-1 3.3 68.9 1.0
CA A:GLN-2 3.4 64.9 1.0
CA A:SER-1 3.4 65.4 1.0
N A:ASN0 3.7 71.4 1.0
C A:SER-1 4.1 72.1 1.0
O A:GLN-2 4.5 70.6 1.0
CA A:ASN0 4.9 70.5 1.0
CB A:ASN0 4.9 70.7 1.0

Copper binding site 2 out of 2 in 5hli

Go back to Copper Binding Sites List in 5hli
Copper binding site 2 out of 2 in the Structure of Disulfide Formed Abfr


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of Disulfide Formed Abfr within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:32.3
occ:1.00
N B:SER-1 2.4 32.7 1.0
N B:GLN-2 2.6 40.5 1.0
OG B:SER-1 2.7 49.5 1.0
CL B:CL202 3.1 41.9 1.0
CB B:SER-1 3.2 37.9 1.0
C B:GLN-2 3.2 28.2 1.0
CA B:SER-1 3.3 35.0 1.0
CA B:GLN-2 3.4 38.9 1.0
N B:ASN0 3.8 36.0 1.0
CB B:GLN-2 4.0 32.5 1.0
C B:SER-1 4.0 37.9 1.0
O B:GLN-2 4.4 38.7 1.0
O B:HOH329 4.7 41.8 1.0
O B:HOH320 4.7 43.3 1.0

Reference:

G.Liu, X.Liu, H.Xu, X.Liu, H.Zhou, Z.Huang, J.Gan, H.Chen, L.Lan, C.G.Yang. Structural Insights Into the Redox-Sensing Mechanism of Marr-Type Regulator Abfr. J. Am. Chem. Soc. V. 139 1598 2017.
ISSN: ESSN 1520-5126
PubMed: 28086264
DOI: 10.1021/JACS.6B11438
Page generated: Sun Dec 13 11:17:43 2020

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