Atomistry » Copper » PDB 5ce9-5i0y » 5g3b
Atomistry »
  Copper »
    PDB 5ce9-5i0y »
      5g3b »

Copper in PDB 5g3b: Preserving Metallic Sites Affected By Radiation Damage: the CUT2 Case in Thermus Thermophilus Multicopper Oxidase

Enzymatic activity of Preserving Metallic Sites Affected By Radiation Damage: the CUT2 Case in Thermus Thermophilus Multicopper Oxidase

All present enzymatic activity of Preserving Metallic Sites Affected By Radiation Damage: the CUT2 Case in Thermus Thermophilus Multicopper Oxidase:
1.10.3.2;

Protein crystallography data

The structure of Preserving Metallic Sites Affected By Radiation Damage: the CUT2 Case in Thermus Thermophilus Multicopper Oxidase, PDB code: 5g3b was solved by R.R.Ruiz-Arellano, A.Diaz, E.Rosas, E.Rudino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.69 / 1.69
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 93.744, 110.332, 96.484, 90.00, 90.00, 90.00
R / Rfree (%) 13.9 / 17.9

Other elements in 5g3b:

The structure of Preserving Metallic Sites Affected By Radiation Damage: the CUT2 Case in Thermus Thermophilus Multicopper Oxidase also contains other interesting chemical elements:

Sodium (Na) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Preserving Metallic Sites Affected By Radiation Damage: the CUT2 Case in Thermus Thermophilus Multicopper Oxidase (pdb code 5g3b). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Preserving Metallic Sites Affected By Radiation Damage: the CUT2 Case in Thermus Thermophilus Multicopper Oxidase, PDB code: 5g3b:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 5g3b

Go back to Copper Binding Sites List in 5g3b
Copper binding site 1 out of 3 in the Preserving Metallic Sites Affected By Radiation Damage: the CUT2 Case in Thermus Thermophilus Multicopper Oxidase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Preserving Metallic Sites Affected By Radiation Damage: the CUT2 Case in Thermus Thermophilus Multicopper Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1470

b:14.3
occ:0.26
NE2 A:HIS398 1.7 7.7 1.0
NE2 A:HIS444 1.8 10.1 1.0
CE1 A:HIS398 2.6 6.6 1.0
CD2 A:HIS444 2.7 7.9 1.0
CE1 A:HIS137 2.8 16.7 1.0
ND1 A:HIS137 2.8 16.2 1.0
CD2 A:HIS398 2.8 7.5 1.0
CE1 A:HIS444 2.9 8.2 1.0
CD2 A:HIS95 3.5 10.7 1.0
CD2 A:HIS396 3.6 7.9 1.0
NE2 A:HIS95 3.7 10.5 1.0
ND1 A:HIS398 3.8 7.1 1.0
O A:HOH2251 3.8 16.6 1.0
NE2 A:HIS137 3.8 22.5 1.0
CG A:HIS398 3.9 5.9 1.0
CG A:HIS137 3.9 13.2 1.0
CG A:HIS444 3.9 8.6 1.0
ND1 A:HIS444 3.9 7.2 1.0
NE2 A:HIS396 4.1 7.5 1.0
CG A:HIS95 4.2 8.8 1.0
CD2 A:HIS137 4.4 17.0 1.0
CE1 A:HIS95 4.4 10.8 1.0
CG2 A:VAL442 4.4 8.2 1.0
ND1 A:HIS95 4.7 8.9 1.0
OE1 A:GLU451 4.7 6.8 0.4
CB A:HIS137 4.8 10.3 1.0
CG A:HIS396 4.9 5.9 1.0
CD A:GLU451 4.9 7.1 0.4
OE2 A:GLU451 4.9 15.4 0.4
CB A:HIS95 5.0 11.2 1.0

Copper binding site 2 out of 3 in 5g3b

Go back to Copper Binding Sites List in 5g3b
Copper binding site 2 out of 3 in the Preserving Metallic Sites Affected By Radiation Damage: the CUT2 Case in Thermus Thermophilus Multicopper Oxidase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Preserving Metallic Sites Affected By Radiation Damage: the CUT2 Case in Thermus Thermophilus Multicopper Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1471

b:9.8
occ:0.84
ND1 A:HIS393 2.1 7.8 1.0
ND1 A:HIS450 2.1 8.2 1.0
SG A:CYS445 2.1 8.7 1.0
CE1 A:HIS393 2.9 14.1 1.0
CE1 A:HIS450 3.1 11.3 1.0
CG A:HIS450 3.1 7.6 1.0
CG A:HIS393 3.2 8.5 1.0
CB A:CYS445 3.2 4.2 1.0
CB A:HIS450 3.4 5.2 1.0
SD A:MET455 3.4 4.5 0.4
CB A:HIS393 3.7 10.6 1.0
SD A:MET455 3.8 13.4 0.6
CB A:ILE447 3.9 3.3 1.0
CD1 A:ILE447 4.0 8.3 1.0
CE A:MET455 4.0 15.1 0.4
CA A:HIS393 4.0 8.1 1.0
NE2 A:HIS393 4.1 10.1 1.0
NE2 A:HIS450 4.2 6.4 1.0
CD2 A:HIS450 4.2 8.2 1.0
CD2 A:HIS393 4.3 7.1 1.0
CG1 A:ILE447 4.4 6.6 1.0
O A:ASP392 4.5 7.0 1.0
CE A:MET455 4.5 5.5 0.6
CD A:PRO394 4.5 3.5 1.0
CA A:CYS445 4.6 4.0 1.0
N A:ILE447 4.7 6.3 1.0
O A:ILE447 4.7 5.8 1.0
CG2 A:ILE447 4.8 6.0 1.0
CA A:ILE447 4.9 6.3 1.0
CA A:HIS450 4.9 6.7 1.0
C A:HIS393 5.0 6.8 1.0
CG A:MET455 5.0 9.9 0.4

Copper binding site 3 out of 3 in 5g3b

Go back to Copper Binding Sites List in 5g3b
Copper binding site 3 out of 3 in the Preserving Metallic Sites Affected By Radiation Damage: the CUT2 Case in Thermus Thermophilus Multicopper Oxidase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Preserving Metallic Sites Affected By Radiation Damage: the CUT2 Case in Thermus Thermophilus Multicopper Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1472

b:8.8
occ:0.99
ND1 A:HIS97 2.0 6.9 1.0
NE2 A:HIS135 2.0 7.4 1.0
NE2 A:HIS446 2.1 5.5 1.0
CE1 A:HIS97 2.9 5.8 1.0
CE1 A:HIS446 2.9 5.8 1.0
CD2 A:HIS135 2.9 7.0 1.0
CE1 A:HIS135 3.0 8.0 1.0
CG A:HIS97 3.0 6.5 1.0
CD2 A:HIS446 3.2 7.7 1.0
CB A:HIS97 3.4 4.8 1.0
CZ2 A:TRP133 3.5 6.4 1.0
CD2 A:HIS95 3.7 10.7 1.0
CE2 A:TRP133 3.8 5.4 1.0
NE1 A:TRP133 4.0 4.4 1.0
NE2 A:HIS97 4.0 5.8 1.0
ND1 A:HIS135 4.1 6.7 1.0
CG A:HIS135 4.1 6.3 1.0
ND1 A:HIS446 4.1 5.4 1.0
CD2 A:HIS97 4.1 7.3 1.0
NE2 A:HIS95 4.2 10.5 1.0
CG A:HIS446 4.2 4.7 1.0
CH2 A:TRP133 4.3 4.4 1.0
NE2 A:HIS396 4.3 7.5 1.0
CD2 A:HIS396 4.4 7.9 1.0
CA A:HIS97 4.7 7.5 1.0
CD2 A:TRP133 4.8 4.6 1.0
CG A:HIS95 4.8 8.8 1.0
CD1 A:TRP133 5.0 3.7 1.0

Reference:

R.Ruiz-Arellano, A.Diaz, E.Rosas, V.Stojanoff, E.Rudino. Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase To Be Published.
Page generated: Wed Jul 31 04:07:24 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy