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Copper in PDB 5fjq: Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus

Protein crystallography data

The structure of Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus, PDB code: 5fjq was solved by Z.Forsberg, C.E.Nelson, B.Dalhus, S.Mekasha, J.S.M.Loose, A.K.Rohr, V.G.H.Eijsink, J.G.Gardner, G.Vaaje-Kolstad, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.75 / 1.85
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 91.500, 50.170, 114.530, 90.00, 90.00, 90.00
R / Rfree (%) 21.775 / 28.369

Copper Binding Sites:

The binding sites of Copper atom in the Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus (pdb code 5fjq). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus, PDB code: 5fjq:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 5fjq

Go back to Copper Binding Sites List in 5fjq
Copper binding site 1 out of 3 in the Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu1217

b:22.6
occ:1.00
NE2 A:HIS136 1.9 15.5 1.0
ND1 A:HIS37 2.0 19.9 1.0
N A:HIS37 2.1 26.1 1.0
CD2 A:HIS136 2.8 15.1 1.0
CG A:HIS37 2.9 21.7 1.0
CE1 A:HIS136 3.0 15.9 1.0
CA A:HIS37 3.1 23.2 1.0
CE1 A:HIS37 3.1 23.1 1.0
CB A:HIS37 3.2 20.3 1.0
CZ A:PHE207 3.3 16.4 1.0
O A:ALA134 3.9 27.2 1.0
CG A:HIS136 4.0 16.9 1.0
OE1 A:GLU205 4.0 21.8 1.0
CE1 A:PHE207 4.0 17.7 1.0
ND1 A:HIS136 4.0 17.1 1.0
CE2 A:PHE207 4.1 18.8 1.0
CD2 A:HIS37 4.1 21.7 1.0
CB A:ALA134 4.1 22.7 1.0
NE2 A:HIS37 4.2 23.6 1.0
C A:HIS37 4.4 21.8 1.0
CD A:GLU205 4.8 22.7 1.0
C A:ALA134 4.8 25.1 1.0
OE2 A:GLU205 4.9 26.4 1.0
NH1 A:ARG197 4.9 23.3 1.0
O A:HIS37 5.0 23.4 1.0

Copper binding site 2 out of 3 in 5fjq

Go back to Copper Binding Sites List in 5fjq
Copper binding site 2 out of 3 in the Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu1217

b:21.3
occ:1.00
NE2 B:HIS136 1.9 18.1 1.0
O B:HOH2001 2.0 22.3 1.0
N B:HIS37 2.1 14.8 1.0
ND1 B:HIS37 2.1 14.0 1.0
O B:HOH2002 2.7 31.6 1.0
CE1 B:HIS136 2.7 20.2 1.0
CA B:HIS37 2.9 17.4 1.0
CG B:HIS37 2.9 17.5 1.0
CD2 B:HIS136 3.0 18.6 1.0
CB B:HIS37 3.1 15.2 1.0
CE1 B:HIS37 3.2 17.9 1.0
CZ B:PHE207 3.2 21.4 1.0
ND1 B:HIS136 3.9 19.1 1.0
CE2 B:PHE207 4.0 20.7 1.0
O B:ALA134 4.0 17.4 1.0
CE1 B:PHE207 4.0 18.5 1.0
CG B:HIS136 4.1 17.6 1.0
CD2 B:HIS37 4.1 16.0 1.0
OE1 B:GLU205 4.1 21.6 1.0
NE2 B:HIS37 4.2 16.4 1.0
CB B:ALA134 4.3 18.5 1.0
C B:HIS37 4.3 17.4 1.0
O B:HOH2015 4.6 28.7 1.0
O B:HOH2014 4.7 25.6 1.0
O B:HIS37 4.8 16.7 1.0
CD B:GLU205 4.8 21.9 1.0
NH1 B:ARG197 4.8 21.1 1.0
C B:ALA134 4.9 17.2 1.0

Copper binding site 3 out of 3 in 5fjq

Go back to Copper Binding Sites List in 5fjq
Copper binding site 3 out of 3 in the Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu1217

b:24.1
occ:1.00
NE2 C:HIS136 2.0 23.4 1.0
N C:HIS37 2.0 18.6 1.0
ND1 C:HIS37 2.0 23.5 1.0
CE1 C:HIS136 2.8 28.3 1.0
CG C:HIS37 2.9 23.9 1.0
CA C:HIS37 3.0 21.4 1.0
CD2 C:HIS136 3.1 26.3 1.0
CE1 C:HIS37 3.1 24.9 1.0
CB C:HIS37 3.2 21.8 1.0
CZ C:PHE207 3.4 15.1 1.0
OE1 C:GLU205 4.0 21.4 1.0
ND1 C:HIS136 4.0 25.1 1.0
O C:ALA134 4.0 24.3 1.0
CE2 C:PHE207 4.1 16.4 1.0
CD2 C:HIS37 4.1 23.3 1.0
CG C:HIS136 4.1 24.8 1.0
NE2 C:HIS37 4.2 24.9 1.0
CE1 C:PHE207 4.2 14.9 1.0
CB C:ALA134 4.4 25.4 1.0
C C:HIS37 4.4 18.4 1.0
NH1 C:ARG197 4.8 22.1 1.0
CD C:GLU205 4.8 19.7 1.0
C C:ALA134 4.9 25.9 1.0
O C:HIS37 4.9 22.4 1.0
O C:HOH2102 5.0 43.5 1.0
OE2 C:GLU205 5.0 20.2 1.0

Reference:

Z.Forsberg, C.E.Nelson, B.Dalhus, S.Mekasha, J.S.M.Loose, A.K.Rohr, V.G.H.Eijsink, J.G.Gardner, G.Vaaje-Kolstad. Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus J.Biol.Chem. V. 291 7300 2016.
ISSN: ISSN 0021-9258
PubMed: 26858252
DOI: 10.1074/JBC.M115.700161
Page generated: Sun Dec 13 11:17:34 2020

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