Copper in PDB 5fjq: Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus

The structure of Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus, PDB code: 5fjq was solved by Z.Forsberg, C.E.Nelson, B.Dalhus, S.Mekasha, J.S.M.Loose, A.K.Rohr, V.G.H.Eijsink, J.G.Gardner, G.Vaaje-Kolstad, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.75 / 1.85
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	91.500, 50.170, 114.530, 90.00, 90.00, 90.00
R / Rfree (%)	21.775 / 28.369

The binding sites of Copper atom in the Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus (pdb code 5fjq). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus, PDB code: 5fjq:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in the Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1217 b:22.6 occ:1.00 NE2 A:HIS136 1.9 15.5 1.0 ND1 A:HIS37 2.0 19.9 1.0 N A:HIS37 2.1 26.1 1.0 CD2 A:HIS136 2.8 15.1 1.0 CG A:HIS37 2.9 21.7 1.0 CE1 A:HIS136 3.0 15.9 1.0 CA A:HIS37 3.1 23.2 1.0 CE1 A:HIS37 3.1 23.1 1.0 CB A:HIS37 3.2 20.3 1.0 CZ A:PHE207 3.3 16.4 1.0 O A:ALA134 3.9 27.2 1.0 CG A:HIS136 4.0 16.9 1.0 OE1 A:GLU205 4.0 21.8 1.0 CE1 A:PHE207 4.0 17.7 1.0 ND1 A:HIS136 4.0 17.1 1.0 CE2 A:PHE207 4.1 18.8 1.0 CD2 A:HIS37 4.1 21.7 1.0 CB A:ALA134 4.1 22.7 1.0 NE2 A:HIS37 4.2 23.6 1.0 C A:HIS37 4.4 21.8 1.0 CD A:GLU205 4.8 22.7 1.0 C A:ALA134 4.8 25.1 1.0 OE2 A:GLU205 4.9 26.4 1.0 NH1 A:ARG197 4.9 23.3 1.0 O A:HIS37 5.0 23.4 1.0

Copper binding site 2 out of 3 in the Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu1217 b:21.3 occ:1.00 NE2 B:HIS136 1.9 18.1 1.0 O B:HOH2001 2.0 22.3 1.0 N B:HIS37 2.1 14.8 1.0 ND1 B:HIS37 2.1 14.0 1.0 O B:HOH2002 2.7 31.6 1.0 CE1 B:HIS136 2.7 20.2 1.0 CA B:HIS37 2.9 17.4 1.0 CG B:HIS37 2.9 17.5 1.0 CD2 B:HIS136 3.0 18.6 1.0 CB B:HIS37 3.1 15.2 1.0 CE1 B:HIS37 3.2 17.9 1.0 CZ B:PHE207 3.2 21.4 1.0 ND1 B:HIS136 3.9 19.1 1.0 CE2 B:PHE207 4.0 20.7 1.0 O B:ALA134 4.0 17.4 1.0 CE1 B:PHE207 4.0 18.5 1.0 CG B:HIS136 4.1 17.6 1.0 CD2 B:HIS37 4.1 16.0 1.0 OE1 B:GLU205 4.1 21.6 1.0 NE2 B:HIS37 4.2 16.4 1.0 CB B:ALA134 4.3 18.5 1.0 C B:HIS37 4.3 17.4 1.0 O B:HOH2015 4.6 28.7 1.0 O B:HOH2014 4.7 25.6 1.0 O B:HIS37 4.8 16.7 1.0 CD B:GLU205 4.8 21.9 1.0 NH1 B:ARG197 4.8 21.1 1.0 C B:ALA134 4.9 17.2 1.0

Copper binding site 3 out of 3 in the Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu1217 b:24.1 occ:1.00 NE2 C:HIS136 2.0 23.4 1.0 N C:HIS37 2.0 18.6 1.0 ND1 C:HIS37 2.0 23.5 1.0 CE1 C:HIS136 2.8 28.3 1.0 CG C:HIS37 2.9 23.9 1.0 CA C:HIS37 3.0 21.4 1.0 CD2 C:HIS136 3.1 26.3 1.0 CE1 C:HIS37 3.1 24.9 1.0 CB C:HIS37 3.2 21.8 1.0 CZ C:PHE207 3.4 15.1 1.0 OE1 C:GLU205 4.0 21.4 1.0 ND1 C:HIS136 4.0 25.1 1.0 O C:ALA134 4.0 24.3 1.0 CE2 C:PHE207 4.1 16.4 1.0 CD2 C:HIS37 4.1 23.3 1.0 CG C:HIS136 4.1 24.8 1.0 NE2 C:HIS37 4.2 24.9 1.0 CE1 C:PHE207 4.2 14.9 1.0 CB C:ALA134 4.4 25.4 1.0 C C:HIS37 4.4 18.4 1.0 NH1 C:ARG197 4.8 22.1 1.0 CD C:GLU205 4.8 19.7 1.0 C C:ALA134 4.9 25.9 1.0 O C:HIS37 4.9 22.4 1.0 O C:HOH2102 5.0 43.5 1.0 OE2 C:GLU205 5.0 20.2 1.0

Z.Forsberg, C.E.Nelson, B.Dalhus, S.Mekasha, J.S.M.Loose, A.K.Rohr, V.G.H.Eijsink, J.G.Gardner, G.Vaaje-Kolstad. Structural and Functional Analysis of A Lytic Polysaccharide Monooxygenase Important For Efficient Utilization of Chitin in Cellvibrio Japonicus J.Biol.Chem. V. 291 7300 2016.
ISSN: ISSN 0021-9258
PubMed: 26858252
DOI: 10.1074/JBC.M115.700161