Copper in PDB 5c14: Crystal Structure of Pecam-1 D1D2 Domain

The structure of Crystal Structure of Pecam-1 D1D2 Domain, PDB code: 5c14 was solved by D.Zhou, C.Paddock, P.Newman, J.Zhu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.79 / 2.80
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	104.010, 104.010, 281.834, 90.00, 90.00, 90.00
R / Rfree (%)	23.8 / 27.9

The binding sites of Copper atom in the Crystal Structure of Pecam-1 D1D2 Domain (pdb code 5c14). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of Pecam-1 D1D2 Domain, PDB code: 5c14:

Copper binding site 1 out of 1 in the Crystal Structure of Pecam-1 D1D2 Domain


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Pecam-1 D1D2 Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu304 b:0.6 occ:1.00 OD2 A:ASP76 3.5 52.2 1.0 O A:GLU71 3.8 77.3 1.0 OH A:TYR75 4.0 72.5 1.0 CG2 A:ILE69 4.2 62.2 1.0 CG A:ASP76 4.3 51.8 1.0 OD1 A:ASP76 4.4 49.6 1.0 O3 A:GOL303 4.6 0.6 1.0 CE1 A:TYR75 4.6 64.4 1.0 CD A:PRO70 4.7 77.5 1.0 CZ A:TYR75 4.8 65.4 1.0 C A:GLU71 4.9 72.4 1.0 N A:GLU71 4.9 75.9 1.0

C.Paddock, D.Zhou, P.Lertkiatmongkol, P.J.Newman, J.Zhu. Structural Basis For Pecam-1 Homophilic Binding. Blood V. 127 1052 2016.
ISSN: ESSN 1528-0020
PubMed: 26702061
DOI: 10.1182/BLOOD-2015-07-660092