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Copper in PDB 5azu: Crystal Structure Analysis of Oxidized Pseudomonas Aeruginosa Azurin at pH 5.5 and pH 9.0. A pH-Induced Conformational Transition Involves A Peptide Bond Flip

Protein crystallography data

The structure of Crystal Structure Analysis of Oxidized Pseudomonas Aeruginosa Azurin at pH 5.5 and pH 9.0. A pH-Induced Conformational Transition Involves A Peptide Bond Flip, PDB code: 5azu was solved by H.Nar, A.Messerschmidt, R.Huber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.760, 81.090, 109.940, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure Analysis of Oxidized Pseudomonas Aeruginosa Azurin at pH 5.5 and pH 9.0. A pH-Induced Conformational Transition Involves A Peptide Bond Flip (pdb code 5azu). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Crystal Structure Analysis of Oxidized Pseudomonas Aeruginosa Azurin at pH 5.5 and pH 9.0. A pH-Induced Conformational Transition Involves A Peptide Bond Flip, PDB code: 5azu:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in 5azu

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Copper binding site 1 out of 4 in the Crystal Structure Analysis of Oxidized Pseudomonas Aeruginosa Azurin at pH 5.5 and pH 9.0. A pH-Induced Conformational Transition Involves A Peptide Bond Flip


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure Analysis of Oxidized Pseudomonas Aeruginosa Azurin at pH 5.5 and pH 9.0. A pH-Induced Conformational Transition Involves A Peptide Bond Flip within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu400

b:10.3
occ:1.00
 ND1 A:HIS46 2.0 9.1 1.0
ND1 A:HIS117 2.1 6.0 1.0
SG A:CYS112 2.3 4.7 1.0
O A:GLY45 2.8 10.0 1.0
CE1 A:HIS46 2.9 2.0 1.0
CE1 A:HIS117 3.0 2.0 1.0
CG A:HIS46 3.0 7.3 1.0
CG A:HIS117 3.1 3.9 1.0
SD A:MET121 3.1 6.5 1.0
CB A:CYS112 3.3 3.9 1.0
CA A:HIS46 3.4 3.4 1.0
CB A:HIS117 3.4 2.0 1.0
CB A:HIS46 3.5 2.0 1.0
C A:GLY45 3.8 4.8 1.0
CB A:PHE114 3.9 4.7 1.0
CE A:MET121 4.0 2.0 1.0
N A:HIS46 4.0 4.6 1.0
NE2 A:HIS46 4.1 2.0 1.0
NE2 A:HIS117 4.1 7.9 1.0
CD2 A:HIS46 4.2 5.9 1.0
CD2 A:HIS117 4.2 9.1 1.0
C A:HIS46 4.6 6.4 1.0
CG A:MET121 4.7 4.9 1.0
N A:ASN47 4.7 11.2 1.0
CG A:PHE114 4.7 3.8 1.0
CA A:CYS112 4.7 5.0 1.0
N A:PHE114 4.8 4.7 1.0
CA A:HIS117 4.9 6.6 1.0
CA A:PHE114 5.0 4.9 1.0
CB A:MET121 5.0 2.0 1.0

Copper binding site 2 out of 4 in 5azu

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Copper binding site 2 out of 4 in the Crystal Structure Analysis of Oxidized Pseudomonas Aeruginosa Azurin at pH 5.5 and pH 9.0. A pH-Induced Conformational Transition Involves A Peptide Bond Flip


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure Analysis of Oxidized Pseudomonas Aeruginosa Azurin at pH 5.5 and pH 9.0. A pH-Induced Conformational Transition Involves A Peptide Bond Flip within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu401

b:11.3
occ:1.00
 ND1 B:HIS46 2.1 13.3 1.0
ND1 B:HIS117 2.1 6.5 1.0
SG B:CYS112 2.3 4.7 1.0
O B:GLY45 2.9 6.7 1.0
CE1 B:HIS117 3.0 6.3 1.0
CE1 B:HIS46 3.0 9.3 1.0
CG B:HIS46 3.1 16.8 1.0
CG B:HIS117 3.1 11.8 1.0
SD B:MET121 3.1 6.6 1.0
CB B:CYS112 3.3 2.0 1.0
CA B:HIS46 3.4 4.1 1.0
CB B:HIS117 3.5 2.0 1.0
CB B:HIS46 3.5 4.7 1.0
C B:GLY45 3.8 6.9 1.0
CB B:PHE114 3.8 8.7 1.0
CE B:MET121 3.9 2.2 1.0
N B:HIS46 4.0 4.5 1.0
NE2 B:HIS117 4.1 6.0 1.0
NE2 B:HIS46 4.1 11.7 1.0
CD2 B:HIS46 4.2 11.5 1.0
CD2 B:HIS117 4.3 2.0 1.0
C B:HIS46 4.5 4.4 1.0
CG B:MET121 4.6 7.5 1.0
N B:ASN47 4.6 11.9 1.0
CG B:PHE114 4.7 5.3 1.0
CA B:CYS112 4.7 6.7 1.0
N B:PHE114 4.8 7.8 1.0
CA B:PHE114 4.9 3.3 1.0
CB B:MET121 5.0 6.4 1.0

Copper binding site 3 out of 4 in 5azu

Go back to Copper Binding Sites List in 5azu
Copper binding site 3 out of 4 in the Crystal Structure Analysis of Oxidized Pseudomonas Aeruginosa Azurin at pH 5.5 and pH 9.0. A pH-Induced Conformational Transition Involves A Peptide Bond Flip


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure Analysis of Oxidized Pseudomonas Aeruginosa Azurin at pH 5.5 and pH 9.0. A pH-Induced Conformational Transition Involves A Peptide Bond Flip within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu402

b:9.2
occ:1.00
 ND1 C:HIS117 2.0 5.4 1.0
ND1 C:HIS46 2.1 10.0 1.0
SG C:CYS112 2.2 5.5 1.0
CE1 C:HIS117 3.0 2.0 1.0
O C:GLY45 3.0 13.2 1.0
CG C:HIS117 3.0 10.6 1.0
CG C:HIS46 3.1 7.6 1.0
CE1 C:HIS46 3.1 8.1 1.0
SD C:MET121 3.2 10.3 1.0
CB C:CYS112 3.2 2.0 1.0
CA C:HIS46 3.3 6.6 1.0
CB C:HIS117 3.4 2.0 1.0
CB C:HIS46 3.5 4.2 1.0
CE C:MET121 3.9 2.0 1.0
C C:GLY45 3.9 3.4 1.0
CB C:PHE114 3.9 5.6 1.0
N C:HIS46 4.0 4.1 1.0
NE2 C:HIS117 4.1 6.9 1.0
CD2 C:HIS117 4.2 6.6 1.0
NE2 C:HIS46 4.2 7.6 1.0
CD2 C:HIS46 4.3 7.0 1.0
C C:HIS46 4.5 2.0 1.0
N C:ASN47 4.6 9.4 1.0
CA C:CYS112 4.7 2.0 1.0
CG C:MET121 4.7 2.0 1.0
CG C:PHE114 4.7 8.4 1.0
CA C:HIS117 4.9 3.7 1.0
N C:PHE114 4.9 11.5 1.0

Copper binding site 4 out of 4 in 5azu

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Copper binding site 4 out of 4 in the Crystal Structure Analysis of Oxidized Pseudomonas Aeruginosa Azurin at pH 5.5 and pH 9.0. A pH-Induced Conformational Transition Involves A Peptide Bond Flip


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure Analysis of Oxidized Pseudomonas Aeruginosa Azurin at pH 5.5 and pH 9.0. A pH-Induced Conformational Transition Involves A Peptide Bond Flip within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu403

b:11.1
occ:1.00
 ND1 D:HIS117 2.0 5.6 1.0
ND1 D:HIS46 2.1 13.2 1.0
SG D:CYS112 2.3 7.0 1.0
CE1 D:HIS117 3.0 2.6 1.0
CG D:HIS117 3.0 4.1 1.0
O D:GLY45 3.0 9.8 1.0
CE1 D:HIS46 3.0 4.5 1.0
SD D:MET121 3.1 4.8 1.0
CG D:HIS46 3.1 5.3 1.0
CB D:CYS112 3.3 2.8 1.0
CB D:HIS117 3.4 2.0 1.0
CA D:HIS46 3.4 4.2 1.0
CB D:HIS46 3.5 2.0 1.0
C D:GLY45 3.9 6.4 1.0
CB D:PHE114 3.9 2.4 1.0
CE D:MET121 3.9 2.0 1.0
NE2 D:HIS117 4.1 2.0 1.0
N D:HIS46 4.1 3.6 1.0
CD2 D:HIS117 4.2 3.2 1.0
NE2 D:HIS46 4.2 6.3 1.0
CD2 D:HIS46 4.2 10.3 1.0
C D:HIS46 4.6 10.4 1.0
CG D:MET121 4.6 3.5 1.0
N D:ASN47 4.6 9.2 1.0
CA D:CYS112 4.7 4.4 1.0
N D:PHE114 4.8 9.6 1.0
CG D:PHE114 4.8 7.7 1.0
CA D:HIS117 4.9 6.2 1.0
CB D:MET121 4.9 2.0 1.0
CA D:PHE114 5.0 10.9 1.0

Reference:

H.Nar, A.Messerschmidt, R.Huber, M.Van De Kamp, G.W.Canters. Crystal Structure Analysis of Oxidized Pseudomonas Aeruginosa Azurin at pH 5.5 and pH 9.0. A pH-Induced Conformational Transition Involves A Peptide Bond Flip. J.Mol.Biol. V. 221 765 1991.
ISSN: ISSN 0022-2836
PubMed: 1942029
DOI: 10.1016/0022-2836(91)80173-R
Page generated: Fri Sep 4 12:05:08 2020
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