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Copper in PDB 5acj: X-Ray Structure of Lpmo

Protein crystallography data

The structure of X-Ray Structure of Lpmo, PDB code: 5acj was solved by K.E.H.Frandsen, J.N.Poulsen, M.Tovborg, K.S.Johansen, L.Lo Leggio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.70
Space group P 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 125.440, 125.440, 125.440, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 22.7

Other elements in 5acj:

The structure of X-Ray Structure of Lpmo also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms

Copper Binding Sites:

The binding sites of Copper atom in the X-Ray Structure of Lpmo (pdb code 5acj). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the X-Ray Structure of Lpmo, PDB code: 5acj:

Copper binding site 1 out of 1 in 5acj

Go back to Copper Binding Sites List in 5acj
Copper binding site 1 out of 1 in the X-Ray Structure of Lpmo


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of X-Ray Structure of Lpmo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu301

b:21.8
occ:1.00
ND1 A:HIC1 1.8 19.2 1.0
NE2 A:HIS78 2.0 19.3 1.0
N A:HIC1 2.3 20.2 1.0
OH A:TYR164 2.7 22.2 1.0
O A:HOH2210 2.8 29.6 0.5
CE1 A:HIC1 2.8 20.4 1.0
CG A:HIC1 2.9 20.3 1.0
CD2 A:HIS78 3.0 19.1 1.0
CE1 A:HIS78 3.0 20.2 1.0
CA A:HIC1 3.3 19.5 1.0
CB A:HIC1 3.4 19.7 1.0
C6 A:BGC1244 3.6 23.6 1.0
CZ A:TYR164 3.6 21.8 1.0
OE1 A:GLN162 3.8 21.7 1.0
NE2 A:HIC1 4.0 21.2 1.0
CD2 A:HIC1 4.0 21.3 1.0
CL A:CL1240 4.1 28.4 0.5
ND1 A:HIS78 4.1 19.5 1.0
CG A:HIS78 4.1 19.7 1.0
O A:HOH2169 4.2 20.4 1.0
CE1 A:TYR164 4.3 21.2 1.0
O6 A:BGC1244 4.3 25.3 1.0
O5 A:BGC1244 4.4 28.0 1.0
C5 A:BGC1244 4.4 25.5 1.0
CE2 A:TYR164 4.5 20.4 1.0
C A:HIC1 4.6 19.0 1.0
C4 A:BGC1244 4.7 26.6 1.0
CD A:GLN162 4.9 22.6 1.0
CE1 A:HIS147 5.0 24.7 1.0

Reference:

K.E.Frandsen, T.J.Simmons, P.Dupree, J.C.Poulsen, G.R.Hemsworth, L.Ciano, E.M.Johnston, M.Tovborg, K.S.Johansen, P.Von Freiesleben, L.Marmuse, S.Fort, S.Cottaz, H.Driguez, B.Henrissat, N.Lenfant, F.Tuna, A.Baldansuren, G.J.Davies, L.Lo Leggio, P.H.Walton. The Molecular Basis of Polysaccharide Cleavage By Lytic Polysaccharide Monooxygenases. Nat. Chem. Biol. V. 12 298 2016.
ISSN: ESSN 1552-4469
PubMed: 26928935
DOI: 10.1038/NCHEMBIO.2029
Page generated: Sun Dec 13 11:16:57 2020

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