Copper in PDB 4z14: Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase)
Protein crystallography data
The structure of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase), PDB code: 4z14
was solved by
C.Molitor,
S.G.Mauracher,
A.Rompel,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.54 /
2.53
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
62.850,
103.790,
175.560,
100.69,
91.90,
105.18
|
R / Rfree (%)
|
20.8 /
25.3
|
Copper Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Copper atom in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase)
(pdb code 4z14). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 16 binding sites of Copper where determined in the
Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase), PDB code: 4z14:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Copper binding site 1 out
of 16 in 4z14
Go back to
Copper Binding Sites List in 4z14
Copper binding site 1 out
of 16 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase)
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu700
b:67.2
occ:1.00
|
NE2
|
D:HIS93
|
2.0
|
54.8
|
1.0
|
NE2
|
D:HIS116
|
2.0
|
60.2
|
1.0
|
NE2
|
D:HIS125
|
2.0
|
56.1
|
1.0
|
O
|
D:HOH834
|
2.2
|
0.3
|
1.0
|
HE1
|
D:HIS125
|
2.7
|
68.0
|
1.0
|
CE1
|
D:HIS125
|
2.7
|
56.7
|
1.0
|
CE1
|
D:HIS116
|
2.9
|
60.9
|
1.0
|
CD2
|
D:HIS93
|
2.9
|
55.9
|
1.0
|
CE1
|
D:HIS93
|
3.0
|
54.9
|
1.0
|
CD2
|
D:HIS116
|
3.1
|
60.6
|
1.0
|
HD2
|
D:HIS93
|
3.1
|
67.1
|
1.0
|
HE1
|
D:HIS93
|
3.2
|
65.8
|
1.0
|
CD2
|
D:HIS125
|
3.3
|
56.0
|
1.0
|
HD2
|
D:HIS116
|
3.3
|
72.7
|
1.0
|
HD11
|
D:ILE115
|
3.4
|
67.9
|
1.0
|
SG
|
D:CYS97
|
3.6
|
67.7
|
1.0
|
HE1
|
D:HIS286
|
3.6
|
64.7
|
1.0
|
HD2
|
D:HIS125
|
3.7
|
67.2
|
1.0
|
HZ
|
D:PHE282
|
3.9
|
56.7
|
1.0
|
ND1
|
D:HIS125
|
3.9
|
56.7
|
1.0
|
CU
|
D:CU701
|
4.0
|
74.7
|
1.0
|
ND1
|
D:HIS116
|
4.0
|
61.6
|
1.0
|
CG
|
D:HIS93
|
4.1
|
56.0
|
1.0
|
ND1
|
D:HIS93
|
4.1
|
55.8
|
1.0
|
CE1
|
D:HIS286
|
4.1
|
53.9
|
1.0
|
CG
|
D:HIS116
|
4.1
|
61.4
|
1.0
|
HE1
|
D:PHE282
|
4.2
|
55.4
|
1.0
|
CG
|
D:HIS125
|
4.2
|
55.9
|
1.0
|
HE1
|
D:PHE121
|
4.2
|
55.0
|
1.0
|
CD1
|
D:ILE115
|
4.3
|
56.6
|
1.0
|
NE2
|
D:HIS286
|
4.4
|
54.0
|
1.0
|
HD1
|
D:PHE273
|
4.4
|
67.1
|
1.0
|
HE1
|
D:PHE273
|
4.4
|
67.4
|
1.0
|
HE2
|
D:PHE124
|
4.4
|
60.9
|
1.0
|
HD12
|
D:ILE115
|
4.5
|
67.9
|
1.0
|
HD13
|
D:ILE115
|
4.5
|
67.9
|
1.0
|
CD1
|
D:PHE273
|
4.5
|
56.0
|
1.0
|
CE1
|
D:PHE273
|
4.5
|
56.2
|
1.0
|
CZ
|
D:PHE282
|
4.6
|
47.3
|
1.0
|
HD1
|
D:HIS125
|
4.6
|
68.1
|
1.0
|
HD2
|
D:PHE124
|
4.8
|
61.9
|
1.0
|
CE1
|
D:PHE282
|
4.8
|
46.1
|
1.0
|
HD1
|
D:HIS116
|
4.8
|
74.0
|
1.0
|
HE1
|
D:HIS252
|
4.8
|
69.5
|
1.0
|
HD1
|
D:PHE121
|
4.8
|
56.2
|
1.0
|
HD1
|
D:HIS93
|
4.9
|
66.9
|
1.0
|
CE1
|
D:PHE121
|
4.9
|
45.9
|
1.0
|
|
Copper binding site 2 out
of 16 in 4z14
Go back to
Copper Binding Sites List in 4z14
Copper binding site 2 out
of 16 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase)
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu701
b:74.7
occ:1.00
|
NE2
|
D:HIS286
|
2.0
|
54.0
|
1.0
|
NE2
|
D:HIS252
|
2.0
|
58.6
|
1.0
|
NE2
|
D:HIS256
|
2.0
|
59.0
|
1.0
|
O
|
D:HOH834
|
2.2
|
0.3
|
1.0
|
HE1
|
D:HIS286
|
2.5
|
64.7
|
1.0
|
CE1
|
D:HIS286
|
2.5
|
53.9
|
1.0
|
CE1
|
D:HIS252
|
2.8
|
57.9
|
1.0
|
HE1
|
D:HIS252
|
2.8
|
69.5
|
1.0
|
CE1
|
D:HIS256
|
2.8
|
58.9
|
1.0
|
HE1
|
D:HIS256
|
3.0
|
70.6
|
1.0
|
CD2
|
D:HIS256
|
3.0
|
57.3
|
1.0
|
HE1
|
D:PHE282
|
3.0
|
55.4
|
1.0
|
CD2
|
D:HIS252
|
3.2
|
58.2
|
1.0
|
CD2
|
D:HIS286
|
3.2
|
53.6
|
1.0
|
HD2
|
D:HIS256
|
3.3
|
68.8
|
1.0
|
HD2
|
D:HIS252
|
3.5
|
69.8
|
1.0
|
HD2
|
D:HIS286
|
3.7
|
64.3
|
1.0
|
ND1
|
D:HIS286
|
3.8
|
53.5
|
1.0
|
HE1
|
D:PHE273
|
3.9
|
67.4
|
1.0
|
CE1
|
D:PHE282
|
3.9
|
46.1
|
1.0
|
ND1
|
D:HIS256
|
3.9
|
57.3
|
1.0
|
ND1
|
D:HIS252
|
4.0
|
57.1
|
1.0
|
HD2
|
D:HIS285
|
4.0
|
58.3
|
1.0
|
CG
|
D:HIS256
|
4.0
|
55.4
|
1.0
|
CU
|
D:CU700
|
4.0
|
67.2
|
1.0
|
HE1
|
D:PHE121
|
4.1
|
55.0
|
1.0
|
CG
|
D:HIS286
|
4.1
|
53.4
|
1.0
|
CG
|
D:HIS252
|
4.2
|
57.1
|
1.0
|
HD1
|
D:PHE282
|
4.4
|
55.6
|
1.0
|
HD1
|
D:HIS286
|
4.5
|
64.2
|
1.0
|
HE1
|
D:HIS93
|
4.5
|
65.8
|
1.0
|
NE2
|
D:HIS125
|
4.6
|
56.1
|
1.0
|
HZ
|
D:PHE121
|
4.6
|
54.9
|
1.0
|
CD1
|
D:PHE282
|
4.6
|
46.4
|
1.0
|
HD1
|
D:HIS256
|
4.6
|
68.8
|
1.0
|
NE2
|
D:HIS93
|
4.6
|
54.8
|
1.0
|
CE1
|
D:PHE273
|
4.7
|
56.2
|
1.0
|
HD1
|
D:HIS252
|
4.7
|
68.5
|
1.0
|
HZ
|
D:PHE282
|
4.7
|
56.7
|
1.0
|
HD1
|
D:PHE273
|
4.7
|
67.1
|
1.0
|
HE2
|
D:HIS285
|
4.7
|
58.0
|
1.0
|
CD2
|
D:HIS285
|
4.7
|
48.6
|
1.0
|
CZ
|
D:PHE282
|
4.8
|
47.3
|
1.0
|
CE1
|
D:PHE121
|
4.8
|
45.9
|
1.0
|
HD12
|
D:ILE456
|
4.8
|
76.4
|
1.0
|
CE1
|
D:HIS93
|
4.9
|
54.9
|
1.0
|
|
Copper binding site 3 out
of 16 in 4z14
Go back to
Copper Binding Sites List in 4z14
Copper binding site 3 out
of 16 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase)
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu700
b:69.5
occ:1.00
|
NE2
|
B:HIS93
|
2.0
|
47.4
|
1.0
|
NE2
|
B:HIS125
|
2.1
|
31.9
|
1.0
|
NE2
|
B:HIS116
|
2.2
|
57.0
|
1.0
|
O
|
B:HOH840
|
2.2
|
53.0
|
1.0
|
CD2
|
B:HIS93
|
2.7
|
47.3
|
1.0
|
HD2
|
B:HIS93
|
2.8
|
56.8
|
1.0
|
CE1
|
B:HIS125
|
2.8
|
31.1
|
1.0
|
HE1
|
B:HIS125
|
2.8
|
37.3
|
1.0
|
CE1
|
B:HIS116
|
3.0
|
57.4
|
1.0
|
CE1
|
B:HIS93
|
3.1
|
47.9
|
1.0
|
CD2
|
B:HIS116
|
3.2
|
56.7
|
1.0
|
CD2
|
B:HIS125
|
3.3
|
31.4
|
1.0
|
HD11
|
B:ILE115
|
3.3
|
62.0
|
1.0
|
SG
|
B:CYS97
|
3.4
|
47.4
|
1.0
|
HD2
|
B:HIS116
|
3.4
|
68.0
|
1.0
|
HE1
|
B:HIS93
|
3.4
|
57.4
|
1.0
|
HD2
|
B:HIS125
|
3.6
|
37.6
|
1.0
|
CG
|
B:HIS93
|
3.9
|
46.8
|
1.0
|
HE1
|
B:HIS286
|
4.0
|
39.7
|
1.0
|
HZ
|
B:PHE282
|
4.0
|
31.3
|
1.0
|
ND1
|
B:HIS125
|
4.0
|
30.8
|
1.0
|
ND1
|
B:HIS93
|
4.1
|
47.7
|
1.0
|
ND1
|
B:HIS116
|
4.2
|
57.8
|
1.0
|
CD1
|
B:ILE115
|
4.2
|
51.7
|
1.0
|
HE2
|
B:PHE124
|
4.2
|
40.0
|
1.0
|
CU
|
B:CU701
|
4.2
|
49.0
|
1.0
|
NE2
|
B:HIS286
|
4.2
|
33.0
|
1.0
|
HE1
|
B:PHE121
|
4.3
|
51.3
|
1.0
|
CG
|
B:HIS125
|
4.3
|
30.4
|
1.0
|
CG
|
B:HIS116
|
4.3
|
57.9
|
1.0
|
CE1
|
B:HIS286
|
4.3
|
33.1
|
1.0
|
HD13
|
B:ILE115
|
4.4
|
62.0
|
1.0
|
HE1
|
B:PHE282
|
4.4
|
31.3
|
1.0
|
HD12
|
B:ILE115
|
4.4
|
62.0
|
1.0
|
HD2
|
B:PHE124
|
4.6
|
39.4
|
1.0
|
HE1
|
B:PHE273
|
4.7
|
58.1
|
1.0
|
HD1
|
B:PHE273
|
4.7
|
58.6
|
1.0
|
HD1
|
B:HIS125
|
4.8
|
37.0
|
1.0
|
CZ
|
B:PHE282
|
4.8
|
26.1
|
1.0
|
CE1
|
B:PHE273
|
4.8
|
48.4
|
1.0
|
CD1
|
B:PHE273
|
4.8
|
48.9
|
1.0
|
HE1
|
B:HIS252
|
4.8
|
47.6
|
1.0
|
HD1
|
B:PHE121
|
4.9
|
49.4
|
1.0
|
HD1
|
B:HIS93
|
4.9
|
57.2
|
1.0
|
HD1
|
B:HIS116
|
4.9
|
69.3
|
1.0
|
CE1
|
B:PHE121
|
4.9
|
42.7
|
1.0
|
CE2
|
B:PHE124
|
5.0
|
33.4
|
1.0
|
CE1
|
B:PHE282
|
5.0
|
26.1
|
1.0
|
CB
|
B:CYS97
|
5.0
|
47.8
|
1.0
|
HB3
|
B:CYS97
|
5.0
|
57.4
|
1.0
|
|
Copper binding site 4 out
of 16 in 4z14
Go back to
Copper Binding Sites List in 4z14
Copper binding site 4 out
of 16 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase)
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu701
b:49.0
occ:1.00
|
O
|
B:HOH802
|
2.0
|
26.3
|
1.0
|
NE2
|
B:HIS256
|
2.0
|
30.6
|
1.0
|
NE2
|
B:HIS252
|
2.1
|
40.2
|
1.0
|
NE2
|
B:HIS286
|
2.1
|
33.0
|
1.0
|
O
|
B:HOH840
|
2.3
|
53.0
|
1.0
|
HE1
|
B:HIS286
|
2.6
|
39.7
|
1.0
|
CE1
|
B:HIS286
|
2.6
|
33.1
|
1.0
|
CE1
|
B:HIS252
|
2.9
|
39.7
|
1.0
|
CE1
|
B:HIS256
|
3.0
|
33.3
|
1.0
|
HE1
|
B:HIS252
|
3.0
|
47.6
|
1.0
|
HE1
|
B:PHE282
|
3.1
|
31.3
|
1.0
|
CD2
|
B:HIS256
|
3.1
|
31.6
|
1.0
|
CD2
|
B:HIS252
|
3.1
|
40.1
|
1.0
|
HE1
|
B:HIS256
|
3.1
|
40.0
|
1.0
|
CD2
|
B:HIS286
|
3.3
|
31.8
|
1.0
|
HD2
|
B:HIS256
|
3.3
|
37.9
|
1.0
|
HD2
|
B:HIS252
|
3.4
|
48.1
|
1.0
|
HD2
|
B:HIS286
|
3.7
|
38.2
|
1.0
|
ND1
|
B:HIS286
|
3.8
|
33.3
|
1.0
|
CE1
|
B:PHE282
|
3.8
|
26.1
|
1.0
|
ND1
|
B:HIS252
|
4.0
|
40.2
|
1.0
|
ND1
|
B:HIS256
|
4.1
|
34.7
|
1.0
|
CG
|
B:HIS286
|
4.1
|
32.0
|
1.0
|
CG
|
B:HIS252
|
4.1
|
40.0
|
1.0
|
CG
|
B:HIS256
|
4.2
|
33.6
|
1.0
|
HE1
|
B:PHE273
|
4.2
|
58.1
|
1.0
|
HD2
|
B:HIS285
|
4.2
|
38.4
|
1.0
|
CU
|
B:CU700
|
4.2
|
69.5
|
1.0
|
HE1
|
B:PHE121
|
4.3
|
51.3
|
1.0
|
HD1
|
B:PHE282
|
4.4
|
31.5
|
1.0
|
HD1
|
B:HIS286
|
4.4
|
39.9
|
1.0
|
CD1
|
B:PHE282
|
4.5
|
26.2
|
1.0
|
NE2
|
B:HIS93
|
4.5
|
47.4
|
1.0
|
HZ
|
B:PHE282
|
4.6
|
31.3
|
1.0
|
CZ
|
B:PHE282
|
4.7
|
26.1
|
1.0
|
HE1
|
B:HIS93
|
4.7
|
57.4
|
1.0
|
NE2
|
B:HIS125
|
4.7
|
31.9
|
1.0
|
HZ
|
B:PHE121
|
4.7
|
52.5
|
1.0
|
HD1
|
B:HIS252
|
4.8
|
48.3
|
1.0
|
HE2
|
B:HIS285
|
4.9
|
38.2
|
1.0
|
CD2
|
B:HIS285
|
4.9
|
32.0
|
1.0
|
HD1
|
B:HIS256
|
4.9
|
41.7
|
1.0
|
CE1
|
B:HIS93
|
4.9
|
47.9
|
1.0
|
HD1
|
B:PHE273
|
4.9
|
58.6
|
1.0
|
CE1
|
B:PHE273
|
5.0
|
48.4
|
1.0
|
|
Copper binding site 5 out
of 16 in 4z14
Go back to
Copper Binding Sites List in 4z14
Copper binding site 5 out
of 16 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase)
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cu700
b:62.5
occ:1.00
|
NE2
|
H:HIS125
|
2.0
|
46.0
|
1.0
|
NE2
|
H:HIS93
|
2.0
|
40.9
|
1.0
|
NE2
|
H:HIS116
|
2.1
|
57.6
|
1.0
|
O
|
H:HOH873
|
2.3
|
48.3
|
1.0
|
HE1
|
H:HIS125
|
2.6
|
54.4
|
1.0
|
CE1
|
H:HIS125
|
2.6
|
45.4
|
1.0
|
CD2
|
H:HIS93
|
2.9
|
41.3
|
1.0
|
CE1
|
H:HIS116
|
3.0
|
57.9
|
1.0
|
CE1
|
H:HIS93
|
3.0
|
45.8
|
1.0
|
HD2
|
H:HIS93
|
3.1
|
49.6
|
1.0
|
CD2
|
H:HIS116
|
3.1
|
56.8
|
1.0
|
HD11
|
H:ILE115
|
3.2
|
60.1
|
1.0
|
CD2
|
H:HIS125
|
3.2
|
45.8
|
1.0
|
HE1
|
H:HIS93
|
3.3
|
55.0
|
1.0
|
HD2
|
H:HIS116
|
3.4
|
68.2
|
1.0
|
SG
|
H:CYS97
|
3.4
|
71.3
|
1.0
|
HE1
|
H:HIS286
|
3.6
|
55.1
|
1.0
|
HD2
|
H:HIS125
|
3.6
|
55.0
|
1.0
|
ND1
|
H:HIS125
|
3.9
|
45.6
|
1.0
|
HZ
|
H:PHE282
|
3.9
|
49.8
|
1.0
|
CD1
|
H:ILE115
|
4.0
|
50.1
|
1.0
|
CG
|
H:HIS93
|
4.1
|
44.5
|
1.0
|
CE1
|
H:HIS286
|
4.1
|
45.9
|
1.0
|
ND1
|
H:HIS93
|
4.1
|
45.3
|
1.0
|
ND1
|
H:HIS116
|
4.1
|
58.2
|
1.0
|
HE1
|
H:PHE121
|
4.2
|
59.4
|
1.0
|
CG
|
H:HIS125
|
4.2
|
45.2
|
1.0
|
HD13
|
H:ILE115
|
4.2
|
60.1
|
1.0
|
CG
|
H:HIS116
|
4.2
|
57.4
|
1.0
|
HD12
|
H:ILE115
|
4.3
|
60.1
|
1.0
|
HE2
|
H:PHE124
|
4.3
|
52.0
|
1.0
|
CU
|
H:CU701
|
4.3
|
58.5
|
1.0
|
HE1
|
H:PHE282
|
4.4
|
49.8
|
1.0
|
NE2
|
H:HIS286
|
4.4
|
46.2
|
1.0
|
HD1
|
H:PHE273
|
4.5
|
60.5
|
1.0
|
HE1
|
H:PHE273
|
4.6
|
60.0
|
1.0
|
HD1
|
H:HIS125
|
4.6
|
54.8
|
1.0
|
CD1
|
H:PHE273
|
4.6
|
50.4
|
1.0
|
CE1
|
H:PHE273
|
4.7
|
50.0
|
1.0
|
HD2
|
H:PHE124
|
4.7
|
52.1
|
1.0
|
CZ
|
H:PHE282
|
4.7
|
41.5
|
1.0
|
HD1
|
H:PHE121
|
4.8
|
58.4
|
1.0
|
CE1
|
H:PHE121
|
4.8
|
49.5
|
1.0
|
HD1
|
H:HIS116
|
4.9
|
69.9
|
1.0
|
HE1
|
H:HIS252
|
4.9
|
53.5
|
1.0
|
HD1
|
H:HIS93
|
4.9
|
54.3
|
1.0
|
CB
|
H:CYS97
|
5.0
|
55.2
|
1.0
|
HB3
|
H:CYS97
|
5.0
|
66.3
|
1.0
|
CE1
|
H:PHE282
|
5.0
|
41.5
|
1.0
|
|
Copper binding site 6 out
of 16 in 4z14
Go back to
Copper Binding Sites List in 4z14
Copper binding site 6 out
of 16 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase)
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cu701
b:58.5
occ:1.00
|
NE2
|
H:HIS256
|
2.0
|
45.2
|
1.0
|
NE2
|
H:HIS252
|
2.0
|
45.5
|
1.0
|
NE2
|
H:HIS286
|
2.0
|
46.2
|
1.0
|
O
|
H:HOH873
|
2.2
|
48.3
|
1.0
|
CE1
|
H:HIS286
|
2.6
|
45.9
|
1.0
|
HE1
|
H:HIS286
|
2.6
|
55.1
|
1.0
|
CE1
|
H:HIS252
|
2.8
|
44.6
|
1.0
|
CE1
|
H:HIS256
|
2.8
|
45.7
|
1.0
|
HE1
|
H:HIS252
|
2.9
|
53.5
|
1.0
|
HE1
|
H:PHE282
|
2.9
|
49.8
|
1.0
|
CD2
|
H:HIS256
|
3.0
|
44.9
|
1.0
|
HE1
|
H:HIS256
|
3.0
|
54.9
|
1.0
|
CD2
|
H:HIS252
|
3.1
|
45.2
|
1.0
|
CD2
|
H:HIS286
|
3.2
|
46.0
|
1.0
|
HD2
|
H:HIS256
|
3.3
|
53.8
|
1.0
|
HD2
|
H:HIS252
|
3.4
|
54.2
|
1.0
|
HD2
|
H:HIS286
|
3.6
|
55.2
|
1.0
|
HD2
|
H:HIS285
|
3.7
|
56.6
|
1.0
|
CE1
|
H:PHE282
|
3.8
|
41.5
|
1.0
|
ND1
|
H:HIS286
|
3.8
|
44.9
|
1.0
|
ND1
|
H:HIS252
|
3.9
|
44.3
|
1.0
|
ND1
|
H:HIS256
|
4.0
|
45.7
|
1.0
|
HE1
|
H:PHE273
|
4.0
|
60.0
|
1.0
|
CG
|
H:HIS256
|
4.1
|
45.0
|
1.0
|
CG
|
H:HIS286
|
4.1
|
45.0
|
1.0
|
CG
|
H:HIS252
|
4.1
|
45.0
|
1.0
|
HD1
|
H:PHE282
|
4.3
|
50.6
|
1.0
|
HE1
|
H:PHE121
|
4.3
|
59.4
|
1.0
|
CU
|
H:CU700
|
4.3
|
62.5
|
1.0
|
CD1
|
H:PHE282
|
4.5
|
42.2
|
1.0
|
HD1
|
H:HIS286
|
4.5
|
53.9
|
1.0
|
CD2
|
H:HIS285
|
4.5
|
47.2
|
1.0
|
HZ
|
H:PHE121
|
4.6
|
58.9
|
1.0
|
HZ
|
H:PHE282
|
4.6
|
49.8
|
1.0
|
HE2
|
H:HIS285
|
4.6
|
55.1
|
1.0
|
HD1
|
H:HIS252
|
4.7
|
53.1
|
1.0
|
CZ
|
H:PHE282
|
4.7
|
41.5
|
1.0
|
HE1
|
H:HIS93
|
4.7
|
55.0
|
1.0
|
HD1
|
H:HIS256
|
4.7
|
54.9
|
1.0
|
HD1
|
H:PHE273
|
4.8
|
60.5
|
1.0
|
CE1
|
H:PHE273
|
4.8
|
50.0
|
1.0
|
NE2
|
H:HIS93
|
4.8
|
40.9
|
1.0
|
NE2
|
H:HIS125
|
4.8
|
46.0
|
1.0
|
HD12
|
H:ILE456
|
5.0
|
79.1
|
1.0
|
NE2
|
H:HIS285
|
5.0
|
45.9
|
1.0
|
|
Copper binding site 7 out
of 16 in 4z14
Go back to
Copper Binding Sites List in 4z14
Copper binding site 7 out
of 16 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase)
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 7 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cu700
b:67.0
occ:1.00
|
NE2
|
F:HIS93
|
2.0
|
56.8
|
1.0
|
NE2
|
F:HIS116
|
2.1
|
53.3
|
1.0
|
NE2
|
F:HIS125
|
2.1
|
45.1
|
1.0
|
O
|
F:HOH880
|
2.4
|
23.2
|
1.0
|
HE1
|
F:HIS125
|
2.6
|
54.3
|
1.0
|
CE1
|
F:HIS125
|
2.7
|
45.2
|
1.0
|
CD2
|
F:HIS93
|
2.8
|
56.3
|
1.0
|
CE1
|
F:HIS116
|
2.9
|
53.9
|
1.0
|
HD2
|
F:HIS93
|
3.0
|
67.6
|
1.0
|
CE1
|
F:HIS93
|
3.0
|
57.4
|
1.0
|
CD2
|
F:HIS116
|
3.1
|
53.2
|
1.0
|
HE1
|
F:HIS93
|
3.3
|
68.9
|
1.0
|
HD11
|
F:ILE115
|
3.3
|
70.2
|
1.0
|
CD2
|
F:HIS125
|
3.4
|
44.0
|
1.0
|
HD2
|
F:HIS116
|
3.4
|
63.8
|
1.0
|
SG
|
F:CYS97
|
3.5
|
56.3
|
1.0
|
HD2
|
F:HIS125
|
3.8
|
52.8
|
1.0
|
HE1
|
F:HIS286
|
3.8
|
50.6
|
1.0
|
HZ
|
F:PHE282
|
3.9
|
56.0
|
1.0
|
ND1
|
F:HIS125
|
3.9
|
43.4
|
1.0
|
CG
|
F:HIS93
|
4.0
|
56.0
|
1.0
|
ND1
|
F:HIS93
|
4.0
|
57.0
|
1.0
|
ND1
|
F:HIS116
|
4.1
|
54.1
|
1.0
|
CD1
|
F:ILE115
|
4.2
|
58.5
|
1.0
|
CG
|
F:HIS116
|
4.2
|
53.7
|
1.0
|
HE1
|
F:PHE121
|
4.2
|
54.2
|
1.0
|
CG
|
F:HIS125
|
4.3
|
42.1
|
1.0
|
HE2
|
F:PHE124
|
4.3
|
50.1
|
1.0
|
CE1
|
F:HIS286
|
4.3
|
42.2
|
1.0
|
HD13
|
F:ILE115
|
4.3
|
70.2
|
1.0
|
HE1
|
F:PHE282
|
4.3
|
55.0
|
1.0
|
HD12
|
F:ILE115
|
4.4
|
70.2
|
1.0
|
CU
|
F:CU701
|
4.4
|
64.9
|
1.0
|
HD1
|
F:PHE273
|
4.5
|
71.7
|
1.0
|
NE2
|
F:HIS286
|
4.6
|
43.3
|
1.0
|
HE1
|
F:PHE273
|
4.6
|
71.0
|
1.0
|
HD1
|
F:HIS125
|
4.6
|
52.1
|
1.0
|
HD2
|
F:PHE124
|
4.6
|
50.1
|
1.0
|
CD1
|
F:PHE273
|
4.6
|
59.7
|
1.0
|
CE1
|
F:PHE273
|
4.7
|
59.2
|
1.0
|
CZ
|
F:PHE282
|
4.7
|
46.6
|
1.0
|
HD1
|
F:HIS116
|
4.8
|
64.9
|
1.0
|
HD1
|
F:HIS93
|
4.8
|
68.3
|
1.0
|
HD1
|
F:PHE121
|
4.9
|
54.5
|
1.0
|
HE1
|
F:HIS252
|
4.9
|
47.4
|
1.0
|
CE1
|
F:PHE121
|
4.9
|
45.1
|
1.0
|
CE1
|
F:PHE282
|
4.9
|
45.8
|
1.0
|
CE2
|
F:PHE124
|
5.0
|
41.7
|
1.0
|
|
Copper binding site 8 out
of 16 in 4z14
Go back to
Copper Binding Sites List in 4z14
Copper binding site 8 out
of 16 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase)
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 8 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cu701
b:64.9
occ:1.00
|
NE2
|
F:HIS286
|
2.0
|
43.3
|
1.0
|
NE2
|
F:HIS256
|
2.0
|
45.5
|
1.0
|
NE2
|
F:HIS252
|
2.0
|
39.7
|
1.0
|
O
|
F:HOH880
|
2.2
|
23.2
|
1.0
|
CE1
|
F:HIS286
|
2.7
|
42.2
|
1.0
|
HE1
|
F:HIS286
|
2.7
|
50.6
|
1.0
|
CE1
|
F:HIS252
|
2.7
|
39.5
|
1.0
|
HE1
|
F:HIS252
|
2.8
|
47.4
|
1.0
|
CE1
|
F:HIS256
|
2.9
|
46.4
|
1.0
|
CD2
|
F:HIS256
|
3.0
|
45.3
|
1.0
|
HE1
|
F:PHE282
|
3.1
|
55.0
|
1.0
|
HE1
|
F:HIS256
|
3.1
|
55.6
|
1.0
|
CD2
|
F:HIS252
|
3.2
|
40.4
|
1.0
|
HD2
|
F:HIS256
|
3.2
|
54.3
|
1.0
|
CD2
|
F:HIS286
|
3.2
|
43.1
|
1.0
|
HD2
|
F:HIS252
|
3.5
|
48.4
|
1.0
|
HD2
|
F:HIS286
|
3.6
|
51.7
|
1.0
|
CE1
|
F:PHE282
|
3.9
|
45.8
|
1.0
|
ND1
|
F:HIS286
|
3.9
|
40.7
|
1.0
|
ND1
|
F:HIS252
|
3.9
|
39.2
|
1.0
|
HD2
|
F:HIS285
|
3.9
|
47.9
|
1.0
|
ND1
|
F:HIS256
|
4.0
|
46.8
|
1.0
|
HE1
|
F:PHE273
|
4.0
|
71.0
|
1.0
|
CG
|
F:HIS256
|
4.0
|
45.8
|
1.0
|
CG
|
F:HIS252
|
4.1
|
40.4
|
1.0
|
CG
|
F:HIS286
|
4.2
|
41.7
|
1.0
|
HE1
|
F:PHE121
|
4.3
|
54.2
|
1.0
|
HD1
|
F:PHE282
|
4.3
|
53.4
|
1.0
|
CU
|
F:CU700
|
4.4
|
67.0
|
1.0
|
HZ
|
F:PHE121
|
4.5
|
53.4
|
1.0
|
CD1
|
F:PHE282
|
4.5
|
44.5
|
1.0
|
HD1
|
F:HIS286
|
4.6
|
48.8
|
1.0
|
HD1
|
F:HIS252
|
4.6
|
47.0
|
1.0
|
HE1
|
F:HIS93
|
4.6
|
68.9
|
1.0
|
HE2
|
F:HIS285
|
4.7
|
47.8
|
1.0
|
CD2
|
F:HIS285
|
4.7
|
39.9
|
1.0
|
HD1
|
F:HIS256
|
4.7
|
56.2
|
1.0
|
NE2
|
F:HIS125
|
4.7
|
45.1
|
1.0
|
HZ
|
F:PHE282
|
4.7
|
56.0
|
1.0
|
NE2
|
F:HIS93
|
4.8
|
56.8
|
1.0
|
HD1
|
F:PHE273
|
4.8
|
71.7
|
1.0
|
CZ
|
F:PHE282
|
4.8
|
46.6
|
1.0
|
HD12
|
F:ILE456
|
4.8
|
84.4
|
1.0
|
CE1
|
F:PHE273
|
4.8
|
59.2
|
1.0
|
CE1
|
F:HIS93
|
5.0
|
57.4
|
1.0
|
CE1
|
F:PHE121
|
5.0
|
45.1
|
1.0
|
|
Copper binding site 9 out
of 16 in 4z14
Go back to
Copper Binding Sites List in 4z14
Copper binding site 9 out
of 16 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase)
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 9 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu700
b:52.7
occ:1.00
|
NE2
|
C:HIS93
|
2.0
|
44.7
|
1.0
|
NE2
|
C:HIS125
|
2.1
|
43.3
|
1.0
|
NE2
|
C:HIS116
|
2.1
|
47.4
|
1.0
|
O
|
C:HOH898
|
2.2
|
1.0
|
1.0
|
CE1
|
C:HIS125
|
2.9
|
43.4
|
1.0
|
CE1
|
C:HIS116
|
2.9
|
48.0
|
1.0
|
CD2
|
C:HIS93
|
2.9
|
45.0
|
1.0
|
HE1
|
C:HIS125
|
3.0
|
52.0
|
1.0
|
CE1
|
C:HIS93
|
3.0
|
46.0
|
1.0
|
HD2
|
C:HIS93
|
3.1
|
54.0
|
1.0
|
CD2
|
C:HIS116
|
3.2
|
47.1
|
1.0
|
CD2
|
C:HIS125
|
3.2
|
42.1
|
1.0
|
HE1
|
C:HIS93
|
3.2
|
55.2
|
1.0
|
HD2
|
C:HIS116
|
3.4
|
56.5
|
1.0
|
HD2
|
C:HIS125
|
3.4
|
50.6
|
1.0
|
HE1
|
C:HIS286
|
3.5
|
50.5
|
1.0
|
HD11
|
C:ILE115
|
3.6
|
60.9
|
1.0
|
SG
|
C:CYS97
|
3.7
|
53.1
|
1.0
|
CE1
|
C:HIS286
|
3.9
|
42.1
|
1.0
|
HZ
|
C:PHE282
|
3.9
|
47.6
|
1.0
|
NE2
|
C:HIS286
|
4.0
|
42.9
|
1.0
|
HE1
|
C:PHE282
|
4.0
|
47.7
|
1.0
|
CU
|
C:CU701
|
4.0
|
61.3
|
1.0
|
ND1
|
C:HIS125
|
4.1
|
42.5
|
1.0
|
ND1
|
C:HIS116
|
4.1
|
47.9
|
1.0
|
CG
|
C:HIS93
|
4.1
|
45.9
|
1.0
|
ND1
|
C:HIS93
|
4.1
|
46.5
|
1.0
|
HE1
|
C:PHE121
|
4.1
|
51.4
|
1.0
|
HD1
|
C:PHE273
|
4.2
|
62.1
|
1.0
|
CG
|
C:HIS116
|
4.2
|
47.5
|
1.0
|
HE1
|
C:PHE273
|
4.2
|
62.0
|
1.0
|
CG
|
C:HIS125
|
4.2
|
41.0
|
1.0
|
CD1
|
C:PHE273
|
4.4
|
51.8
|
1.0
|
CE1
|
C:PHE273
|
4.4
|
51.7
|
1.0
|
CD1
|
C:ILE115
|
4.5
|
50.7
|
1.0
|
HE2
|
C:PHE124
|
4.6
|
50.1
|
1.0
|
CZ
|
C:PHE282
|
4.6
|
39.7
|
1.0
|
HE1
|
C:HIS252
|
4.6
|
53.1
|
1.0
|
HD12
|
C:ILE115
|
4.7
|
60.9
|
1.0
|
CE1
|
C:PHE282
|
4.7
|
39.8
|
1.0
|
HD13
|
C:ILE115
|
4.7
|
60.9
|
1.0
|
HD1
|
C:HIS125
|
4.8
|
50.9
|
1.0
|
HD1
|
C:HIS116
|
4.8
|
57.4
|
1.0
|
HD1
|
C:PHE121
|
4.8
|
50.2
|
1.0
|
CE1
|
C:PHE121
|
4.9
|
42.8
|
1.0
|
HD1
|
C:HIS93
|
4.9
|
55.9
|
1.0
|
HD2
|
C:PHE124
|
4.9
|
49.7
|
1.0
|
ND1
|
C:HIS286
|
5.0
|
41.6
|
1.0
|
|
Copper binding site 10 out
of 16 in 4z14
Go back to
Copper Binding Sites List in 4z14
Copper binding site 10 out
of 16 in the Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase)
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 10 of Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu701
b:61.3
occ:1.00
|
NE2
|
C:HIS286
|
1.9
|
42.9
|
1.0
|
NE2
|
C:HIS256
|
2.0
|
39.6
|
1.0
|
NE2
|
C:HIS252
|
2.1
|
45.0
|
1.0
|
O
|
C:HOH898
|
2.2
|
1.0
|
1.0
|
CE1
|
C:HIS286
|
2.7
|
42.1
|
1.0
|
HE1
|
C:HIS286
|
2.7
|
50.5
|
1.0
|
CE1
|
C:HIS256
|
2.9
|
39.8
|
1.0
|
CE1
|
C:HIS252
|
2.9
|
44.3
|
1.0
|
HE1
|
C:HIS256
|
3.0
|
47.7
|
1.0
|
CD2
|
C:HIS256
|
3.0
|
38.6
|
1.0
|
CD2
|
C:HIS286
|
3.0
|
42.7
|
1.0
|
HE1
|
C:HIS252
|
3.1
|
53.1
|
1.0
|
HE1
|
C:PHE282
|
3.1
|
47.7
|
1.0
|
CD2
|
C:HIS252
|
3.1
|
44.1
|
1.0
|
HD2
|
C:HIS256
|
3.3
|
46.3
|
1.0
|
HD2
|
C:HIS252
|
3.4
|
52.9
|
1.0
|
HD2
|
C:HIS286
|
3.4
|
51.3
|
1.0
|
HD2
|
C:HIS285
|
3.6
|
46.1
|
1.0
|
ND1
|
C:HIS286
|
3.8
|
41.6
|
1.0
|
HE1
|
C:PHE273
|
3.9
|
62.0
|
1.0
|
CE1
|
C:PHE282
|
3.9
|
39.8
|
1.0
|
ND1
|
C:HIS256
|
4.0
|
39.2
|
1.0
|
CG
|
C:HIS286
|
4.0
|
41.9
|
1.0
|
CU
|
C:CU700
|
4.0
|
52.7
|
1.0
|
ND1
|
C:HIS252
|
4.1
|
43.9
|
1.0
|
CG
|
C:HIS256
|
4.1
|
38.4
|
1.0
|
CG
|
C:HIS252
|
4.2
|
43.6
|
1.0
|
HE1
|
C:PHE121
|
4.2
|
51.4
|
1.0
|
HD1
|
C:PHE282
|
4.3
|
47.2
|
1.0
|
CD2
|
C:HIS285
|
4.4
|
38.4
|
1.0
|
HE2
|
C:HIS285
|
4.4
|
45.4
|
1.0
|
HD1
|
C:HIS286
|
4.5
|
49.9
|
1.0
|
CD1
|
C:PHE282
|
4.5
|
39.4
|
1.0
|
HZ
|
C:PHE121
|
4.7
|
51.1
|
1.0
|
HE1
|
C:HIS93
|
4.7
|
55.2
|
1.0
|
CE1
|
C:PHE273
|
4.7
|
51.7
|
1.0
|
NE2
|
C:HIS93
|
4.7
|
44.7
|
1.0
|
HD1
|
C:PHE273
|
4.7
|
62.1
|
1.0
|
HD1
|
C:HIS256
|
4.7
|
47.0
|
1.0
|
NE2
|
C:HIS285
|
4.8
|
37.8
|
1.0
|
HD1
|
C:HIS252
|
4.8
|
52.7
|
1.0
|
HZ
|
C:PHE282
|
4.8
|
47.6
|
1.0
|
CZ
|
C:PHE282
|
4.8
|
39.7
|
1.0
|
NE2
|
C:HIS125
|
4.8
|
43.3
|
1.0
|
|
Reference:
C.Molitor,
S.G.Mauracher,
A.Rompel.
Recombinantly Expressed Latent Aurone Synthase (Polyphenol Oxidase) To Be Published.
Page generated: Wed Jul 31 03:45:47 2024
|