Copper in PDB 4z0y: Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1
Protein crystallography data
The structure of Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1, PDB code: 4z0y
was solved by
C.Molitor,
S.G.Mauracher,
A.Rompel,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.65 /
1.60
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
88.720,
90.560,
182.590,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.7 /
19.4
|
Copper Binding Sites:
The binding sites of Copper atom in the Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1
(pdb code 4z0y). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the
Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1, PDB code: 4z0y:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Copper binding site 1 out
of 8 in 4z0y
Go back to
Copper Binding Sites List in 4z0y
Copper binding site 1 out
of 8 in the Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu601
b:18.9
occ:1.00
|
O
|
A:HOH701
|
1.7
|
29.0
|
0.8
|
NE2
|
A:HIS125
|
1.9
|
15.4
|
1.0
|
NE2
|
A:HIS93
|
2.0
|
12.3
|
1.0
|
NE2
|
A:HIS116
|
2.1
|
12.6
|
1.0
|
O1
|
A:HIS252
|
2.7
|
24.9
|
0.5
|
CE1
|
A:HIS125
|
2.8
|
13.1
|
1.0
|
HE1
|
A:HIS125
|
2.9
|
15.8
|
1.0
|
CD2
|
A:HIS93
|
2.9
|
12.1
|
1.0
|
CE1
|
A:HIS93
|
3.0
|
13.2
|
1.0
|
CD2
|
A:HIS116
|
3.0
|
13.8
|
1.0
|
CE1
|
A:HIS116
|
3.1
|
12.1
|
1.0
|
CD2
|
A:HIS125
|
3.1
|
15.2
|
1.0
|
HD2
|
A:HIS93
|
3.1
|
14.5
|
1.0
|
HD2
|
A:HIS116
|
3.2
|
16.5
|
1.0
|
HE1
|
A:HIS93
|
3.2
|
15.8
|
1.0
|
HD2
|
A:HIS125
|
3.4
|
18.3
|
1.0
|
HD11
|
A:ILE115
|
3.5
|
16.4
|
1.0
|
SG
|
A:CYS97
|
3.6
|
12.8
|
1.0
|
HZ
|
A:PHE282
|
3.8
|
14.6
|
1.0
|
S
|
A:HIS252
|
3.9
|
28.1
|
0.5
|
CU
|
A:CU602
|
3.9
|
24.0
|
0.6
|
ND1
|
A:HIS125
|
4.0
|
14.1
|
1.0
|
ND1
|
A:HIS93
|
4.0
|
11.6
|
1.0
|
CG
|
A:HIS93
|
4.0
|
10.9
|
1.0
|
HE1
|
A:PHE282
|
4.1
|
14.4
|
1.0
|
CG
|
A:HIS125
|
4.1
|
14.7
|
1.0
|
ND1
|
A:HIS116
|
4.2
|
11.9
|
1.0
|
CG
|
A:HIS116
|
4.2
|
12.5
|
1.0
|
NE2
|
A:HIS286
|
4.2
|
18.4
|
1.0
|
CD1
|
A:ILE115
|
4.2
|
13.7
|
1.0
|
HD12
|
A:ILE115
|
4.3
|
16.4
|
1.0
|
HE1
|
A:HIS286
|
4.3
|
20.2
|
1.0
|
HD1
|
A:PHE273
|
4.4
|
28.1
|
1.0
|
HD13
|
A:ILE115
|
4.4
|
16.4
|
1.0
|
HE1
|
A:PHE121
|
4.4
|
17.5
|
1.0
|
CE1
|
A:HIS286
|
4.5
|
16.9
|
1.0
|
O3
|
A:HIS252
|
4.5
|
27.6
|
0.5
|
O2
|
A:HIS252
|
4.5
|
36.3
|
0.5
|
HE2
|
A:PHE124
|
4.6
|
14.3
|
1.0
|
CZ
|
A:PHE282
|
4.6
|
12.2
|
1.0
|
CD1
|
A:PHE273
|
4.7
|
23.4
|
1.0
|
HD1
|
A:HIS125
|
4.7
|
17.0
|
1.0
|
CE1
|
A:PHE282
|
4.7
|
12.0
|
1.0
|
HD2
|
A:PHE124
|
4.7
|
14.9
|
1.0
|
HD1
|
A:HIS93
|
4.8
|
13.9
|
1.0
|
HD1
|
A:PHE121
|
4.8
|
15.5
|
1.0
|
HB3
|
A:PHE273
|
4.9
|
20.5
|
1.0
|
HD1
|
A:HIS116
|
4.9
|
14.3
|
1.0
|
HE1
|
A:PHE273
|
4.9
|
32.0
|
1.0
|
|
Copper binding site 2 out
of 8 in 4z0y
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Copper Binding Sites List in 4z0y
Copper binding site 2 out
of 8 in the Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu602
b:24.0
occ:0.55
|
O1
|
A:HIS252
|
1.9
|
24.9
|
0.5
|
S
|
A:HIS252
|
2.0
|
28.1
|
0.5
|
NE2
|
A:HIS252
|
2.0
|
14.5
|
0.5
|
CE1
|
A:HIS252
|
2.1
|
14.1
|
0.5
|
NE2
|
A:HIS256
|
2.2
|
23.3
|
1.0
|
NE2
|
A:HIS286
|
2.2
|
18.4
|
1.0
|
NE2
|
A:HIS252
|
2.2
|
15.3
|
0.5
|
O3
|
A:HIS252
|
2.4
|
27.6
|
0.5
|
O
|
A:HOH701
|
2.6
|
29.0
|
0.8
|
CE1
|
A:HIS252
|
3.0
|
15.4
|
0.5
|
CD2
|
A:HIS252
|
3.0
|
14.6
|
0.5
|
CE1
|
A:HIS256
|
3.0
|
21.1
|
1.0
|
CD2
|
A:HIS256
|
3.1
|
24.6
|
1.0
|
CD2
|
A:HIS286
|
3.1
|
18.3
|
1.0
|
HE1
|
A:PHE282
|
3.2
|
14.4
|
1.0
|
HE1
|
A:HIS252
|
3.2
|
18.4
|
0.5
|
CE1
|
A:HIS286
|
3.2
|
16.9
|
1.0
|
HE1
|
A:HIS256
|
3.2
|
25.3
|
1.0
|
HD2
|
A:HIS252
|
3.2
|
17.5
|
0.5
|
HD2
|
A:HIS286
|
3.3
|
21.9
|
1.0
|
HD2
|
A:HIS256
|
3.3
|
29.5
|
1.0
|
HE1
|
A:HIS286
|
3.4
|
20.2
|
1.0
|
ND1
|
A:HIS252
|
3.4
|
14.6
|
0.5
|
O2
|
A:HIS252
|
3.6
|
36.3
|
0.5
|
CD2
|
A:HIS252
|
3.6
|
15.4
|
0.5
|
HE1
|
A:PHE121
|
3.8
|
17.5
|
1.0
|
CU
|
A:CU601
|
3.9
|
18.9
|
1.0
|
CE1
|
A:PHE282
|
4.0
|
12.0
|
1.0
|
ND1
|
A:HIS256
|
4.1
|
20.7
|
1.0
|
ND1
|
A:HIS252
|
4.1
|
15.0
|
0.5
|
CG
|
A:HIS252
|
4.2
|
14.6
|
0.5
|
CG
|
A:HIS252
|
4.2
|
14.7
|
0.5
|
CG
|
A:HIS256
|
4.2
|
21.5
|
1.0
|
HD2
|
A:HIS285
|
4.2
|
17.6
|
1.0
|
HE1
|
A:HIS93
|
4.2
|
15.8
|
1.0
|
ND1
|
A:HIS286
|
4.3
|
18.8
|
1.0
|
CG
|
A:HIS286
|
4.3
|
17.4
|
1.0
|
NE2
|
A:HIS125
|
4.4
|
15.4
|
1.0
|
NE2
|
A:HIS93
|
4.5
|
12.3
|
1.0
|
HD1
|
A:PHE282
|
4.5
|
17.3
|
1.0
|
HE2
|
A:HIS285
|
4.5
|
19.0
|
1.0
|
CE1
|
A:PHE121
|
4.7
|
14.6
|
1.0
|
HE1
|
A:PHE273
|
4.7
|
32.0
|
1.0
|
CE1
|
A:HIS93
|
4.7
|
13.2
|
1.0
|
CD1
|
A:PHE282
|
4.7
|
14.4
|
1.0
|
HD1
|
A:PHE273
|
4.7
|
28.1
|
1.0
|
HZ
|
A:PHE282
|
4.7
|
14.6
|
1.0
|
HZ
|
A:PHE121
|
4.7
|
18.3
|
1.0
|
CZ
|
A:PHE282
|
4.8
|
12.2
|
1.0
|
HD2
|
A:HIS116
|
4.8
|
16.5
|
1.0
|
HD2
|
A:HIS125
|
4.8
|
18.3
|
1.0
|
CD2
|
A:HIS125
|
4.8
|
15.2
|
1.0
|
HD1
|
A:HIS256
|
4.8
|
24.9
|
1.0
|
CD2
|
A:HIS285
|
4.9
|
14.6
|
1.0
|
HD1
|
A:HIS252
|
4.9
|
18.0
|
0.5
|
|
Copper binding site 3 out
of 8 in 4z0y
Go back to
Copper Binding Sites List in 4z0y
Copper binding site 3 out
of 8 in the Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu601
b:17.7
occ:1.00
|
NE2
|
B:HIS93
|
1.9
|
9.7
|
1.0
|
NE2
|
B:HIS125
|
2.0
|
8.7
|
1.0
|
NE2
|
B:HIS116
|
2.0
|
10.2
|
1.0
|
O
|
B:HOH701
|
2.1
|
28.4
|
0.5
|
O2
|
B:HIS252
|
2.6
|
23.8
|
0.5
|
CE1
|
B:HIS125
|
2.8
|
10.3
|
1.0
|
CE1
|
B:HIS93
|
2.9
|
13.2
|
1.0
|
HE1
|
B:HIS125
|
2.9
|
12.3
|
1.0
|
CD2
|
B:HIS93
|
2.9
|
10.0
|
1.0
|
CD2
|
B:HIS116
|
3.0
|
12.7
|
1.0
|
CE1
|
B:HIS116
|
3.0
|
11.0
|
1.0
|
HE1
|
B:HIS93
|
3.1
|
15.8
|
1.0
|
CD2
|
B:HIS125
|
3.1
|
9.9
|
1.0
|
HD2
|
B:HIS93
|
3.2
|
12.0
|
1.0
|
HD2
|
B:HIS116
|
3.2
|
15.2
|
1.0
|
HD2
|
B:HIS125
|
3.4
|
11.9
|
1.0
|
HD11
|
B:ILE115
|
3.5
|
14.5
|
1.0
|
SG
|
B:CYS97
|
3.6
|
11.9
|
1.0
|
S
|
B:HIS252
|
3.7
|
25.6
|
0.5
|
CU
|
B:CU602
|
3.9
|
23.5
|
0.6
|
HZ
|
B:PHE282
|
4.0
|
16.7
|
1.0
|
ND1
|
B:HIS93
|
4.0
|
11.9
|
1.0
|
ND1
|
B:HIS125
|
4.0
|
9.8
|
1.0
|
CG
|
B:HIS93
|
4.0
|
9.9
|
1.0
|
HE1
|
B:PHE282
|
4.1
|
16.5
|
1.0
|
NE2
|
B:HIS286
|
4.1
|
19.2
|
1.0
|
ND1
|
B:HIS116
|
4.1
|
12.4
|
1.0
|
CG
|
B:HIS116
|
4.1
|
11.3
|
1.0
|
CG
|
B:HIS125
|
4.2
|
9.4
|
1.0
|
HE1
|
B:HIS286
|
4.2
|
19.8
|
1.0
|
HD1
|
B:PHE273
|
4.2
|
26.7
|
1.0
|
O1
|
B:HIS252
|
4.2
|
32.1
|
0.5
|
CD1
|
B:ILE115
|
4.3
|
12.1
|
1.0
|
HE1
|
B:PHE121
|
4.3
|
14.8
|
1.0
|
HD12
|
B:ILE115
|
4.3
|
14.5
|
1.0
|
CE1
|
B:HIS286
|
4.4
|
16.5
|
1.0
|
O3
|
B:HIS252
|
4.4
|
27.2
|
0.5
|
HD13
|
B:ILE115
|
4.5
|
14.5
|
1.0
|
HE2
|
B:PHE124
|
4.5
|
12.4
|
1.0
|
CD1
|
B:PHE273
|
4.5
|
22.3
|
1.0
|
CZ
|
B:PHE282
|
4.7
|
13.9
|
1.0
|
HD2
|
B:PHE124
|
4.7
|
12.0
|
1.0
|
CE1
|
B:PHE282
|
4.7
|
13.8
|
1.0
|
HD1
|
B:HIS125
|
4.7
|
11.7
|
1.0
|
HD1
|
B:HIS93
|
4.7
|
14.3
|
1.0
|
HE1
|
B:PHE273
|
4.8
|
31.1
|
1.0
|
HD1
|
B:PHE121
|
4.9
|
14.9
|
1.0
|
CE1
|
B:PHE273
|
4.9
|
25.9
|
1.0
|
HB3
|
B:PHE273
|
4.9
|
22.3
|
1.0
|
HD1
|
B:HIS116
|
4.9
|
14.8
|
1.0
|
|
Copper binding site 4 out
of 8 in 4z0y
Go back to
Copper Binding Sites List in 4z0y
Copper binding site 4 out
of 8 in the Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu602
b:23.5
occ:0.64
|
O2
|
B:HIS252
|
1.9
|
23.8
|
0.5
|
NE2
|
B:HIS252
|
2.0
|
10.7
|
0.5
|
S
|
B:HIS252
|
2.0
|
25.6
|
0.5
|
CE1
|
B:HIS252
|
2.0
|
11.0
|
0.5
|
NE2
|
B:HIS286
|
2.1
|
19.2
|
1.0
|
NE2
|
B:HIS252
|
2.2
|
10.7
|
0.5
|
O
|
B:HOH701
|
2.2
|
28.4
|
0.5
|
NE2
|
B:HIS256
|
2.2
|
18.3
|
1.0
|
O3
|
B:HIS252
|
2.4
|
27.2
|
0.5
|
CD2
|
B:HIS252
|
3.0
|
11.2
|
0.5
|
CE1
|
B:HIS252
|
3.0
|
11.4
|
0.5
|
CE1
|
B:HIS256
|
3.0
|
17.5
|
1.0
|
CD2
|
B:HIS286
|
3.1
|
18.1
|
1.0
|
CD2
|
B:HIS256
|
3.1
|
19.7
|
1.0
|
HD2
|
B:HIS252
|
3.1
|
13.4
|
0.5
|
CE1
|
B:HIS286
|
3.1
|
16.5
|
1.0
|
HE1
|
B:PHE282
|
3.2
|
16.5
|
1.0
|
HE1
|
B:HIS252
|
3.2
|
13.7
|
0.5
|
HD2
|
B:HIS286
|
3.2
|
21.7
|
1.0
|
HE1
|
B:HIS256
|
3.2
|
21.0
|
1.0
|
HD2
|
B:HIS256
|
3.3
|
23.7
|
1.0
|
HE1
|
B:HIS286
|
3.3
|
19.8
|
1.0
|
ND1
|
B:HIS252
|
3.4
|
11.4
|
0.5
|
CD2
|
B:HIS252
|
3.6
|
12.1
|
0.5
|
O1
|
B:HIS252
|
3.6
|
32.1
|
0.5
|
CU
|
B:CU601
|
3.9
|
17.7
|
1.0
|
HE1
|
B:PHE121
|
3.9
|
14.8
|
1.0
|
CE1
|
B:PHE282
|
4.0
|
13.8
|
1.0
|
ND1
|
B:HIS252
|
4.1
|
12.2
|
0.5
|
ND1
|
B:HIS256
|
4.1
|
16.6
|
1.0
|
CG
|
B:HIS252
|
4.1
|
11.8
|
0.5
|
CG
|
B:HIS252
|
4.1
|
11.8
|
0.5
|
HD2
|
B:HIS285
|
4.1
|
16.6
|
1.0
|
CG
|
B:HIS256
|
4.1
|
17.4
|
1.0
|
HE1
|
B:HIS93
|
4.2
|
15.8
|
1.0
|
CG
|
B:HIS286
|
4.2
|
14.4
|
1.0
|
ND1
|
B:HIS286
|
4.2
|
17.4
|
1.0
|
HD1
|
B:PHE282
|
4.5
|
15.4
|
1.0
|
HE2
|
B:HIS285
|
4.5
|
17.5
|
1.0
|
NE2
|
B:HIS93
|
4.5
|
9.7
|
1.0
|
NE2
|
B:HIS125
|
4.5
|
8.7
|
1.0
|
HE1
|
B:PHE273
|
4.6
|
31.1
|
1.0
|
HZ
|
B:PHE121
|
4.6
|
14.8
|
1.0
|
HD1
|
B:PHE273
|
4.6
|
26.7
|
1.0
|
CE1
|
B:HIS93
|
4.6
|
13.2
|
1.0
|
CD1
|
B:PHE282
|
4.7
|
12.8
|
1.0
|
CE1
|
B:PHE121
|
4.7
|
12.3
|
1.0
|
CD2
|
B:HIS285
|
4.8
|
13.8
|
1.0
|
HD1
|
B:HIS256
|
4.8
|
20.0
|
1.0
|
HZ
|
B:PHE282
|
4.8
|
16.7
|
1.0
|
HD1
|
B:HIS252
|
4.9
|
14.6
|
0.5
|
HD2
|
B:HIS116
|
4.9
|
15.2
|
1.0
|
CZ
|
B:PHE282
|
4.9
|
13.9
|
1.0
|
HD2
|
B:HIS125
|
4.9
|
11.9
|
1.0
|
CD2
|
B:HIS125
|
4.9
|
9.9
|
1.0
|
NE2
|
B:HIS285
|
5.0
|
14.6
|
1.0
|
|
Copper binding site 5 out
of 8 in 4z0y
Go back to
Copper Binding Sites List in 4z0y
Copper binding site 5 out
of 8 in the Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu601
b:16.3
occ:1.00
|
O
|
C:HOH701
|
1.8
|
28.7
|
0.5
|
NE2
|
C:HIS93
|
1.9
|
10.0
|
1.0
|
NE2
|
C:HIS125
|
2.0
|
9.7
|
1.0
|
NE2
|
C:HIS116
|
2.0
|
8.6
|
1.0
|
O1
|
C:HIS252
|
2.6
|
23.2
|
0.5
|
CE1
|
C:HIS125
|
2.7
|
11.6
|
1.0
|
HE1
|
C:HIS125
|
2.8
|
13.9
|
1.0
|
CD2
|
C:HIS93
|
2.9
|
10.8
|
1.0
|
CE1
|
C:HIS93
|
2.9
|
11.6
|
1.0
|
CD2
|
C:HIS116
|
3.0
|
9.9
|
1.0
|
CE1
|
C:HIS116
|
3.0
|
9.0
|
1.0
|
HD2
|
C:HIS93
|
3.1
|
12.9
|
1.0
|
CD2
|
C:HIS125
|
3.1
|
11.0
|
1.0
|
HD2
|
C:HIS116
|
3.2
|
11.8
|
1.0
|
HE1
|
C:HIS93
|
3.2
|
13.9
|
1.0
|
HD11
|
C:ILE115
|
3.4
|
12.2
|
1.0
|
HD2
|
C:HIS125
|
3.5
|
13.2
|
1.0
|
SG
|
C:CYS97
|
3.5
|
10.4
|
1.0
|
S
|
C:HIS252
|
3.7
|
22.0
|
0.5
|
HZ
|
C:PHE282
|
3.9
|
14.1
|
1.0
|
CU
|
C:CU602
|
3.9
|
23.6
|
0.6
|
ND1
|
C:HIS125
|
3.9
|
12.8
|
1.0
|
ND1
|
C:HIS93
|
4.0
|
12.0
|
1.0
|
CG
|
C:HIS93
|
4.0
|
9.8
|
1.0
|
HE1
|
C:PHE282
|
4.1
|
13.1
|
1.0
|
ND1
|
C:HIS116
|
4.1
|
9.9
|
1.0
|
CG
|
C:HIS116
|
4.1
|
9.3
|
1.0
|
CG
|
C:HIS125
|
4.2
|
10.7
|
1.0
|
CD1
|
C:ILE115
|
4.2
|
10.1
|
1.0
|
NE2
|
C:HIS286
|
4.2
|
19.9
|
1.0
|
O2
|
C:HIS252
|
4.2
|
36.9
|
0.5
|
HD12
|
C:ILE115
|
4.3
|
12.2
|
1.0
|
O3
|
C:HIS252
|
4.3
|
20.2
|
0.5
|
HD13
|
C:ILE115
|
4.3
|
12.2
|
1.0
|
HE1
|
C:PHE121
|
4.3
|
13.7
|
1.0
|
HE1
|
C:HIS286
|
4.4
|
20.5
|
1.0
|
HD1
|
C:PHE273
|
4.4
|
21.8
|
1.0
|
HE2
|
C:PHE124
|
4.5
|
11.8
|
1.0
|
CE1
|
C:HIS286
|
4.5
|
17.1
|
1.0
|
CD1
|
C:PHE273
|
4.6
|
18.2
|
1.0
|
CZ
|
C:PHE282
|
4.6
|
11.7
|
1.0
|
HD1
|
C:HIS125
|
4.7
|
15.4
|
1.0
|
HD2
|
C:PHE124
|
4.7
|
11.9
|
1.0
|
CE1
|
C:PHE282
|
4.7
|
10.9
|
1.0
|
HD1
|
C:HIS93
|
4.8
|
14.3
|
1.0
|
HD1
|
C:PHE121
|
4.8
|
14.3
|
1.0
|
HB3
|
C:PHE273
|
4.9
|
14.2
|
1.0
|
HD1
|
C:HIS116
|
4.9
|
11.8
|
1.0
|
CE1
|
C:PHE273
|
4.9
|
22.2
|
1.0
|
HE1
|
C:PHE273
|
4.9
|
26.7
|
1.0
|
|
Copper binding site 6 out
of 8 in 4z0y
Go back to
Copper Binding Sites List in 4z0y
Copper binding site 6 out
of 8 in the Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu602
b:23.6
occ:0.55
|
O1
|
C:HIS252
|
1.9
|
23.2
|
0.5
|
S
|
C:HIS252
|
1.9
|
22.0
|
0.5
|
NE2
|
C:HIS252
|
2.0
|
11.3
|
0.5
|
CE1
|
C:HIS252
|
2.1
|
12.1
|
0.5
|
NE2
|
C:HIS252
|
2.2
|
11.4
|
0.5
|
NE2
|
C:HIS286
|
2.2
|
19.9
|
1.0
|
O3
|
C:HIS252
|
2.2
|
20.2
|
0.5
|
NE2
|
C:HIS256
|
2.3
|
25.9
|
1.0
|
O
|
C:HOH701
|
2.6
|
28.7
|
0.5
|
CD2
|
C:HIS252
|
3.0
|
12.6
|
0.5
|
CE1
|
C:HIS252
|
3.0
|
11.5
|
0.5
|
CE1
|
C:HIS256
|
3.0
|
21.9
|
1.0
|
CD2
|
C:HIS286
|
3.0
|
17.2
|
1.0
|
HE1
|
C:PHE282
|
3.1
|
13.1
|
1.0
|
HD2
|
C:HIS286
|
3.1
|
20.7
|
1.0
|
HE1
|
C:HIS256
|
3.2
|
26.3
|
1.0
|
HD2
|
C:HIS252
|
3.2
|
15.1
|
0.5
|
HE1
|
C:HIS252
|
3.2
|
13.8
|
0.5
|
CD2
|
C:HIS256
|
3.3
|
22.1
|
1.0
|
CE1
|
C:HIS286
|
3.3
|
17.1
|
1.0
|
ND1
|
C:HIS252
|
3.5
|
13.1
|
0.5
|
O2
|
C:HIS252
|
3.5
|
36.9
|
0.5
|
HD2
|
C:HIS256
|
3.5
|
26.5
|
1.0
|
CD2
|
C:HIS252
|
3.6
|
12.3
|
0.5
|
HE1
|
C:HIS286
|
3.6
|
20.5
|
1.0
|
CE1
|
C:PHE282
|
3.9
|
10.9
|
1.0
|
HE1
|
C:PHE121
|
3.9
|
13.7
|
1.0
|
CU
|
C:CU601
|
3.9
|
16.3
|
1.0
|
ND1
|
C:HIS256
|
4.0
|
18.5
|
1.0
|
ND1
|
C:HIS252
|
4.1
|
12.5
|
0.5
|
CG
|
C:HIS252
|
4.1
|
12.5
|
0.5
|
CG
|
C:HIS252
|
4.2
|
12.5
|
0.5
|
HE1
|
C:HIS93
|
4.2
|
13.9
|
1.0
|
CG
|
C:HIS256
|
4.2
|
16.8
|
1.0
|
HD2
|
C:HIS285
|
4.2
|
17.6
|
1.0
|
CG
|
C:HIS286
|
4.2
|
14.9
|
1.0
|
ND1
|
C:HIS286
|
4.3
|
15.9
|
1.0
|
HD1
|
C:PHE282
|
4.4
|
12.7
|
1.0
|
NE2
|
C:HIS93
|
4.4
|
10.0
|
1.0
|
NE2
|
C:HIS125
|
4.5
|
9.7
|
1.0
|
HE1
|
C:PHE273
|
4.5
|
26.7
|
1.0
|
HE2
|
C:HIS285
|
4.5
|
20.1
|
1.0
|
CD1
|
C:PHE282
|
4.6
|
10.6
|
1.0
|
CE1
|
C:HIS93
|
4.6
|
11.6
|
1.0
|
HD1
|
C:PHE273
|
4.6
|
21.8
|
1.0
|
HZ
|
C:PHE282
|
4.6
|
14.1
|
1.0
|
CZ
|
C:PHE282
|
4.7
|
11.7
|
1.0
|
HZ
|
C:PHE121
|
4.7
|
15.1
|
1.0
|
HD1
|
C:HIS256
|
4.7
|
22.2
|
1.0
|
CE1
|
C:PHE121
|
4.8
|
11.4
|
1.0
|
HD1
|
C:HIS252
|
4.9
|
14.9
|
0.5
|
CD2
|
C:HIS285
|
4.9
|
14.7
|
1.0
|
HD2
|
C:HIS116
|
4.9
|
11.8
|
1.0
|
CD2
|
C:HIS125
|
4.9
|
11.0
|
1.0
|
HD2
|
C:HIS125
|
4.9
|
13.2
|
1.0
|
|
Copper binding site 7 out
of 8 in 4z0y
Go back to
Copper Binding Sites List in 4z0y
Copper binding site 7 out
of 8 in the Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 7 of Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu601
b:14.8
occ:1.00
|
NE2
|
D:HIS93
|
1.9
|
8.5
|
1.0
|
NE2
|
D:HIS125
|
2.0
|
9.7
|
1.0
|
NE2
|
D:HIS116
|
2.0
|
8.4
|
1.0
|
O
|
D:HOH701
|
2.1
|
28.9
|
0.5
|
O1
|
D:HIS252
|
2.6
|
25.4
|
0.5
|
CE1
|
D:HIS125
|
2.9
|
10.0
|
1.0
|
CD2
|
D:HIS93
|
2.9
|
10.1
|
1.0
|
CE1
|
D:HIS93
|
2.9
|
9.6
|
1.0
|
HE1
|
D:HIS125
|
3.0
|
12.0
|
1.0
|
CE1
|
D:HIS116
|
3.0
|
9.1
|
1.0
|
CD2
|
D:HIS116
|
3.0
|
10.4
|
1.0
|
HD2
|
D:HIS93
|
3.1
|
12.1
|
1.0
|
CD2
|
D:HIS125
|
3.1
|
11.2
|
1.0
|
HE1
|
D:HIS93
|
3.1
|
11.5
|
1.0
|
HD2
|
D:HIS116
|
3.2
|
12.5
|
1.0
|
HD2
|
D:HIS125
|
3.4
|
13.5
|
1.0
|
HD11
|
D:ILE115
|
3.4
|
12.5
|
1.0
|
SG
|
D:CYS97
|
3.5
|
8.7
|
1.0
|
S
|
D:HIS252
|
3.7
|
22.1
|
0.5
|
HZ
|
D:PHE282
|
3.9
|
13.6
|
1.0
|
CU
|
D:CU602
|
3.9
|
22.3
|
0.6
|
ND1
|
D:HIS93
|
4.0
|
10.8
|
1.0
|
CG
|
D:HIS93
|
4.0
|
8.3
|
1.0
|
ND1
|
D:HIS125
|
4.0
|
10.1
|
1.0
|
HE1
|
D:PHE282
|
4.1
|
13.1
|
1.0
|
ND1
|
D:HIS116
|
4.1
|
7.7
|
1.0
|
NE2
|
D:HIS286
|
4.1
|
19.4
|
1.0
|
HE1
|
D:HIS286
|
4.1
|
19.1
|
1.0
|
CG
|
D:HIS116
|
4.2
|
8.1
|
1.0
|
CD1
|
D:ILE115
|
4.2
|
10.4
|
1.0
|
CG
|
D:HIS125
|
4.2
|
8.7
|
1.0
|
O2
|
D:HIS252
|
4.2
|
30.2
|
0.5
|
HD12
|
D:ILE115
|
4.3
|
12.5
|
1.0
|
HE1
|
D:PHE121
|
4.3
|
10.0
|
1.0
|
HD13
|
D:ILE115
|
4.3
|
12.5
|
1.0
|
HD1
|
D:PHE273
|
4.4
|
18.8
|
1.0
|
O3
|
D:HIS252
|
4.4
|
22.1
|
0.5
|
CE1
|
D:HIS286
|
4.4
|
15.9
|
1.0
|
HE2
|
D:PHE124
|
4.6
|
13.4
|
1.0
|
CZ
|
D:PHE282
|
4.6
|
11.3
|
1.0
|
CD1
|
D:PHE273
|
4.6
|
15.7
|
1.0
|
HD2
|
D:PHE124
|
4.7
|
13.0
|
1.0
|
CE1
|
D:PHE282
|
4.7
|
10.9
|
1.0
|
HD1
|
D:HIS93
|
4.8
|
13.0
|
1.0
|
HD1
|
D:HIS125
|
4.8
|
12.1
|
1.0
|
HB3
|
D:PHE273
|
4.8
|
12.7
|
1.0
|
HD1
|
D:PHE121
|
4.8
|
12.7
|
1.0
|
HD1
|
D:HIS116
|
4.9
|
9.2
|
1.0
|
HE1
|
D:PHE273
|
4.9
|
21.6
|
1.0
|
CE1
|
D:PHE273
|
5.0
|
18.0
|
1.0
|
|
Copper binding site 8 out
of 8 in 4z0y
Go back to
Copper Binding Sites List in 4z0y
Copper binding site 8 out
of 8 in the Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 8 of Active Aurone Synthase (Polyphenol Oxidase), Copper B : Sulfohistidine ~ 1.4 : 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu602
b:22.3
occ:0.61
|
O1
|
D:HIS252
|
1.9
|
25.4
|
0.5
|
S
|
D:HIS252
|
2.0
|
22.1
|
0.5
|
NE2
|
D:HIS286
|
2.1
|
19.4
|
1.0
|
CE1
|
D:HIS252
|
2.1
|
10.2
|
0.5
|
NE2
|
D:HIS252
|
2.1
|
9.6
|
0.5
|
NE2
|
D:HIS252
|
2.1
|
9.6
|
0.5
|
NE2
|
D:HIS256
|
2.2
|
20.8
|
1.0
|
O
|
D:HOH701
|
2.3
|
28.9
|
0.5
|
O3
|
D:HIS252
|
2.4
|
22.1
|
0.5
|
CE1
|
D:HIS286
|
3.0
|
15.9
|
1.0
|
CE1
|
D:HIS256
|
3.0
|
20.0
|
1.0
|
CD2
|
D:HIS252
|
3.0
|
10.5
|
0.5
|
CD2
|
D:HIS286
|
3.0
|
18.9
|
1.0
|
HE1
|
D:PHE282
|
3.0
|
13.1
|
1.0
|
CD2
|
D:HIS256
|
3.1
|
20.5
|
1.0
|
CE1
|
D:HIS252
|
3.1
|
9.1
|
0.5
|
HD2
|
D:HIS252
|
3.1
|
12.6
|
0.5
|
HE1
|
D:HIS256
|
3.2
|
24.0
|
1.0
|
HE1
|
D:HIS286
|
3.2
|
19.1
|
1.0
|
HD2
|
D:HIS286
|
3.2
|
22.6
|
1.0
|
HE1
|
D:HIS252
|
3.4
|
11.0
|
0.5
|
HD2
|
D:HIS256
|
3.4
|
24.6
|
1.0
|
ND1
|
D:HIS252
|
3.4
|
10.0
|
0.5
|
CD2
|
D:HIS252
|
3.6
|
10.0
|
0.5
|
O2
|
D:HIS252
|
3.6
|
30.2
|
0.5
|
CE1
|
D:PHE282
|
3.9
|
10.9
|
1.0
|
HE1
|
D:PHE121
|
3.9
|
10.0
|
1.0
|
CU
|
D:CU601
|
3.9
|
14.8
|
1.0
|
ND1
|
D:HIS256
|
4.0
|
16.8
|
1.0
|
ND1
|
D:HIS286
|
4.1
|
16.1
|
1.0
|
CG
|
D:HIS256
|
4.1
|
15.2
|
1.0
|
HD2
|
D:HIS285
|
4.1
|
15.1
|
1.0
|
CG
|
D:HIS252
|
4.1
|
10.4
|
0.5
|
CG
|
D:HIS286
|
4.1
|
16.3
|
1.0
|
CG
|
D:HIS252
|
4.2
|
10.4
|
0.5
|
ND1
|
D:HIS252
|
4.2
|
10.1
|
0.5
|
HE1
|
D:HIS93
|
4.3
|
11.5
|
1.0
|
HD1
|
D:PHE282
|
4.4
|
13.8
|
1.0
|
NE2
|
D:HIS93
|
4.5
|
8.5
|
1.0
|
NE2
|
D:HIS125
|
4.5
|
9.7
|
1.0
|
CD1
|
D:PHE282
|
4.6
|
11.5
|
1.0
|
HE2
|
D:HIS285
|
4.6
|
14.9
|
1.0
|
HZ
|
D:PHE282
|
4.6
|
13.6
|
1.0
|
HZ
|
D:PHE121
|
4.7
|
12.9
|
1.0
|
CE1
|
D:HIS93
|
4.7
|
9.6
|
1.0
|
HD1
|
D:PHE273
|
4.7
|
18.8
|
1.0
|
CZ
|
D:PHE282
|
4.7
|
11.3
|
1.0
|
HD1
|
D:HIS256
|
4.7
|
20.2
|
1.0
|
CE1
|
D:PHE121
|
4.7
|
8.3
|
1.0
|
HE1
|
D:PHE273
|
4.8
|
21.6
|
1.0
|
CD2
|
D:HIS285
|
4.8
|
12.6
|
1.0
|
HD1
|
D:HIS286
|
4.9
|
19.3
|
1.0
|
HD2
|
D:HIS125
|
4.9
|
13.5
|
1.0
|
CD2
|
D:HIS125
|
4.9
|
11.2
|
1.0
|
HD2
|
D:HIS116
|
4.9
|
12.5
|
1.0
|
O
|
D:HOH959
|
4.9
|
33.0
|
1.0
|
HD1
|
D:HIS252
|
5.0
|
12.2
|
0.5
|
|
Reference:
C.Molitor,
S.G.Mauracher,
A.Rompel.
Aurone Synthase Is A Catechol Oxidase with Hydroxylase Activity and Provides Insights Into the Mechanism of Plant Polyphenol Oxidases. Proc.Natl.Acad.Sci.Usa V. 113 E1806 2016.
ISSN: ESSN 1091-6490
PubMed: 26976571
DOI: 10.1073/PNAS.1523575113
Page generated: Wed Jul 31 03:42:43 2024
|