Copper in PDB 4w9z: Crystal Structure of the Periplasmic Domain of Subunit II of Cytochrome Oxidase (Coxb) of Bradyrhizobium Japonicum

All present enzymatic activity of Crystal Structure of the Periplasmic Domain of Subunit II of Cytochrome Oxidase (Coxb) of Bradyrhizobium Japonicum:
1.9.3.1;

The structure of Crystal Structure of the Periplasmic Domain of Subunit II of Cytochrome Oxidase (Coxb) of Bradyrhizobium Japonicum, PDB code: 4w9z was solved by N.Quade, H.K.Abicht, H.Hennecke, R.Glockshuber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	59.12 / 1.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	32.431, 38.612, 59.644, 90.00, 97.63, 90.00
R / Rfree (%)	10.9 / 13.4

The binding sites of Copper atom in the Crystal Structure of the Periplasmic Domain of Subunit II of Cytochrome Oxidase (Coxb) of Bradyrhizobium Japonicum (pdb code 4w9z). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of the Periplasmic Domain of Subunit II of Cytochrome Oxidase (Coxb) of Bradyrhizobium Japonicum, PDB code: 4w9z:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the Crystal Structure of the Periplasmic Domain of Subunit II of Cytochrome Oxidase (Coxb) of Bradyrhizobium Japonicum


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of the Periplasmic Domain of Subunit II of Cytochrome Oxidase (Coxb) of Bradyrhizobium Japonicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu301 b:8.3 occ:1.00 ND1 A:HIS194 2.0 7.5 1.0 SG A:CYS229 2.3 8.2 1.0 SG A:CYS233 2.3 8.4 1.0 SD A:MET240 2.4 7.9 1.0 CU A:CU302 2.5 8.5 1.0 CE1 A:HIS194 3.0 7.7 1.0 CG A:HIS194 3.1 7.7 1.0 CE A:MET240 3.2 8.4 1.0 CB A:CYS229 3.3 7.7 1.0 CB A:CYS233 3.3 9.2 1.0 CB A:HIS194 3.5 7.4 1.0 CG A:MET240 3.7 7.6 1.0 O A:GLU231 4.0 9.1 1.0 CA A:HIS194 4.1 7.1 1.0 NE2 A:HIS194 4.1 7.9 1.0 CD2 A:HIS194 4.2 8.0 1.0 ND1 A:HIS237 4.3 8.5 1.0 CD1 A:TRP142 4.7 8.5 1.0 CA A:CYS233 4.7 10.0 1.0 CA A:CYS229 4.7 8.6 1.0 CA A:HIS237 4.8 8.6 1.0 O A:LYS140 4.8 7.2 1.0 O A:ILE193 4.9 9.8 1.0 O A:HIS237 4.9 9.7 1.0 N A:CYS233 5.0 9.3 1.0

Copper binding site 2 out of 2 in the Crystal Structure of the Periplasmic Domain of Subunit II of Cytochrome Oxidase (Coxb) of Bradyrhizobium Japonicum


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of the Periplasmic Domain of Subunit II of Cytochrome Oxidase (Coxb) of Bradyrhizobium Japonicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu302 b:8.5 occ:1.00 ND1 A:HIS237 2.0 8.5 1.0 SG A:CYS233 2.3 8.4 1.0 SG A:CYS229 2.3 8.2 1.0 O A:GLU231 2.4 9.1 1.0 CU A:CU301 2.5 8.3 1.0 CE1 A:HIS237 2.9 8.7 1.0 CG A:HIS237 3.1 8.8 1.0 CB A:CYS233 3.3 9.2 1.0 CB A:CYS229 3.3 7.7 1.0 C A:GLU231 3.4 8.9 1.0 CB A:HIS237 3.5 9.7 1.0 N A:CYS233 3.6 9.3 1.0 CA A:HIS237 3.7 8.6 1.0 O A:HIS237 4.0 9.7 1.0 C A:LEU232 4.0 9.0 1.0 CA A:CYS233 4.0 10.0 1.0 CA A:LEU232 4.1 9.4 1.0 NE2 A:HIS237 4.1 9.8 1.0 N A:LEU232 4.1 10.0 1.0 N A:GLU231 4.2 8.5 1.0 CD2 A:HIS237 4.2 10.3 1.0 ND1 A:HIS194 4.2 7.5 1.0 SD A:MET240 4.3 7.9 1.0 C A:HIS237 4.3 8.8 1.0 CA A:GLU231 4.4 8.8 1.0 C A:CYS229 4.4 8.0 1.0 O A:CYS229 4.4 9.4 1.0 CA A:CYS229 4.5 8.6 1.0 CG A:MET240 4.8 7.6 1.0 N A:SER230 4.9 9.0 1.0 O A:LEU232 4.9 10.6 1.0 C A:CYS233 4.9 9.5 1.0 NE2 A:GLN228 4.9 10.4 0.6 N A:HIS237 5.0 8.8 1.0

N.Quade, H.K.Abicht, H.Hennecke, R.Glockshuber. Crystal Structure of the Periplasmic Domain of Subunit II of Cytochrome Oxidase (Coxb) of Bradyrhizobium Japonicum To Be Published.