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Copper in PDB 4oy7: Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper.

Protein crystallography data

The structure of Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper., PDB code: 4oy7 was solved by Z.Forsberg, A.K.Mackenzie, M.Sorlie, A.K.Rohr, R.Helland, A.S.Arvai, G.Vaaje-Kolstad, V.G.H.Eijsink, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.90 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 83.858, 122.856, 156.000, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 22.2

Other elements in 4oy7:

The structure of Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper. also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper. (pdb code 4oy7). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper., PDB code: 4oy7:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Copper binding site 1 out of 8 in 4oy7

Go back to Copper Binding Sites List in 4oy7
Copper binding site 1 out of 8 in the Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu301

b:25.7
occ:0.50
 O A:HOH452 1.8 7.5 0.5
N A:HIS35 2.2 11.3 1.0
ND1 A:HIS35 2.2 13.6 1.0
NE2 A:HIS144 2.4 12.7 1.0
CG A:HIS35 3.2 13.0 1.0
CE1 A:HIS35 3.2 13.9 1.0
CA A:HIS35 3.2 11.1 1.0
CE1 A:HIS144 3.3 12.7 1.0
CD2 A:HIS144 3.4 11.8 1.0
CZ A:PHE219 3.4 8.5 1.0
CB A:HIS35 3.4 12.3 1.0
CB A:ALA142 3.6 12.5 1.0
CE1 A:PHE219 4.0 8.3 1.0
OE1 A:GLU217 4.0 10.7 1.0
O A:ALA142 4.1 11.2 1.0
CE2 A:PHE219 4.3 8.3 1.0
NE2 A:HIS35 4.3 14.3 1.0
CD2 A:HIS35 4.3 13.9 1.0
ND1 A:HIS144 4.5 12.7 1.0
CG A:HIS144 4.5 11.9 1.0
C A:HIS35 4.6 10.3 1.0
CA A:ALA142 4.6 12.4 1.0
C A:ALA142 4.6 12.1 1.0
CD A:GLU217 4.8 10.1 1.0
O A:HOH546 4.9 22.4 1.0
N A:ALA142 4.9 11.9 1.0
O A:HIS35 5.0 10.6 1.0
OE2 A:GLU217 5.0 11.1 1.0

Copper binding site 2 out of 8 in 4oy7

Go back to Copper Binding Sites List in 4oy7
Copper binding site 2 out of 8 in the Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu301

b:19.1
occ:0.50
 O B:HOH1051 1.6 10.2 0.5
ND1 B:HIS35 2.2 12.6 1.0
NE2 B:HIS144 2.3 12.0 1.0
N B:HIS35 2.3 10.5 1.0
CE1 B:HIS35 3.2 13.2 1.0
CG B:HIS35 3.2 12.1 1.0
CE1 B:HIS144 3.3 12.7 1.0
CZ B:PHE219 3.3 8.8 1.0
CA B:HIS35 3.3 10.4 1.0
CD2 B:HIS144 3.3 11.7 1.0
CB B:HIS35 3.5 11.5 1.0
CB B:ALA142 3.7 13.4 1.0
OE1 B:GLU217 3.8 11.4 1.0
CE1 B:PHE219 3.9 8.5 1.0
O B:HOH1212 4.2 23.3 1.0
CE2 B:PHE219 4.2 8.4 1.0
O B:ALA142 4.2 12.5 1.0
NE2 B:HIS35 4.3 13.3 1.0
CD2 B:HIS35 4.3 12.8 1.0
ND1 B:HIS144 4.4 12.7 1.0
CG B:HIS144 4.4 11.7 1.0
CD B:GLU217 4.6 10.8 1.0
C B:HIS35 4.6 9.8 1.0
O B:HOH1149 4.6 22.1 1.0
C B:ALA142 4.7 12.8 1.0
CA B:ALA142 4.7 13.2 1.0
OE2 B:GLU217 4.8 11.8 1.0
NH1 B:ARG212 5.0 10.4 1.0

Copper binding site 3 out of 8 in 4oy7

Go back to Copper Binding Sites List in 4oy7
Copper binding site 3 out of 8 in the Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu301

b:15.4
occ:0.50
 O C:HOH446 1.9 12.9 0.5
N C:HIS35 2.3 10.8 1.0
NE2 C:HIS144 2.3 11.8 1.0
ND1 C:HIS35 2.3 12.7 1.0
CG C:HIS35 3.2 12.2 1.0
CE1 C:HIS144 3.2 12.3 1.0
CA C:HIS35 3.2 10.6 1.0
CD2 C:HIS144 3.3 11.3 1.0
CB C:HIS35 3.4 11.6 1.0
CE1 C:HIS35 3.4 13.1 1.0
CZ C:PHE219 3.4 8.4 1.0
CB C:ALA142 3.5 12.2 1.0
OE1 C:GLU217 3.9 10.5 1.0
CE1 C:PHE219 4.0 8.2 1.0
O C:HOH569 4.2 19.4 1.0
O C:ALA142 4.3 12.0 1.0
CE2 C:PHE219 4.3 8.1 1.0
ND1 C:HIS144 4.4 12.3 1.0
CD2 C:HIS35 4.4 13.0 1.0
CG C:HIS144 4.4 11.6 1.0
NE2 C:HIS35 4.5 13.4 1.0
C C:HIS35 4.6 10.1 1.0
CA C:ALA142 4.6 12.3 1.0
C C:ALA142 4.7 12.1 1.0
O C:HOH607 4.8 28.8 1.0
CD C:GLU217 4.8 9.6 1.0
O C:HOH531 4.8 21.6 1.0

Copper binding site 4 out of 8 in 4oy7

Go back to Copper Binding Sites List in 4oy7
Copper binding site 4 out of 8 in the Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu301

b:17.9
occ:0.50
 O D:HOH428 1.6 5.0 0.5
ND1 D:HIS35 2.1 12.7 1.0
N D:HIS35 2.3 10.8 1.0
NE2 D:HIS144 2.4 12.0 1.0
CE1 D:HIS35 3.1 12.9 1.0
CG D:HIS35 3.1 12.1 1.0
CA D:HIS35 3.3 10.5 1.0
CZ D:PHE219 3.3 7.8 1.0
CE1 D:HIS144 3.4 12.5 1.0
CB D:HIS35 3.4 11.6 1.0
CD2 D:HIS144 3.4 11.5 1.0
CB D:ALA142 3.6 11.8 1.0
OE1 D:GLU217 3.8 9.5 1.0
CE1 D:PHE219 4.0 7.5 1.0
CE2 D:PHE219 4.2 7.6 1.0
O D:HOH560 4.2 29.8 1.0
NE2 D:HIS35 4.2 13.1 1.0
CD2 D:HIS35 4.2 12.7 1.0
O D:ALA142 4.3 11.2 1.0
ND1 D:HIS144 4.5 12.6 1.0
O D:HOH525 4.5 20.3 1.0
CG D:HIS144 4.6 11.7 1.0
CD D:GLU217 4.6 9.0 1.0
C D:HIS35 4.6 9.9 1.0
CA D:ALA142 4.7 11.8 1.0
C D:ALA142 4.8 11.5 1.0
OE2 D:GLU217 4.9 9.7 1.0

Copper binding site 5 out of 8 in 4oy7

Go back to Copper Binding Sites List in 4oy7
Copper binding site 5 out of 8 in the Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu301

b:13.6
occ:0.50
 O E:HOH448 2.0 9.3 0.5
ND1 E:HIS35 2.1 10.7 1.0
NE2 E:HIS144 2.3 8.0 1.0
N E:HIS35 2.3 8.6 1.0
O E:HOH449 2.9 25.2 1.0
CG E:HIS35 3.1 10.0 1.0
CE1 E:HIS35 3.1 10.8 1.0
CA E:HIS35 3.2 8.4 1.0
CE1 E:HIS144 3.2 8.2 1.0
CD2 E:HIS144 3.3 7.7 1.0
CB E:HIS35 3.4 9.3 1.0
CZ E:PHE219 3.5 6.1 1.0
CB E:ALA142 3.6 8.5 1.0
O E:HOH618 4.0 24.3 1.0
CE1 E:PHE219 4.0 6.0 1.0
OE1 E:GLU217 4.1 8.5 1.0
O E:ALA142 4.2 7.8 1.0
NE2 E:HIS35 4.2 11.3 1.0
CD2 E:HIS35 4.2 10.7 1.0
ND1 E:HIS144 4.3 8.2 1.0
CE2 E:PHE219 4.4 6.0 1.0
CG E:HIS144 4.4 7.7 1.0
C E:HIS35 4.5 7.7 1.0
CA E:ALA142 4.6 8.4 1.0
C E:ALA142 4.6 8.1 1.0
CD E:GLU217 4.9 8.0 1.0
O E:HIS35 4.9 8.0 1.0
O E:HOH588 4.9 20.9 1.0
N E:ALA142 4.9 8.1 1.0

Copper binding site 6 out of 8 in 4oy7

Go back to Copper Binding Sites List in 4oy7
Copper binding site 6 out of 8 in the Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cu301

b:11.1
occ:0.50
 O F:HOH451 1.8 8.4 0.5
N F:HIS35 2.1 9.4 1.0
ND1 F:HIS35 2.3 12.4 1.0
NE2 F:HIS144 2.3 9.9 1.0
CD2 F:HIS144 3.1 9.2 1.0
CA F:HIS35 3.2 9.3 1.0
CG F:HIS35 3.2 11.5 1.0
CE1 F:HIS35 3.3 13.3 1.0
CZ F:PHE219 3.4 7.2 1.0
CB F:HIS35 3.4 10.5 1.0
CE1 F:HIS144 3.4 10.0 1.0
CB F:ALA142 3.6 9.2 1.0
CE1 F:PHE219 4.0 7.1 1.0
OE1 F:GLU217 4.1 8.3 1.0
CE2 F:PHE219 4.2 7.2 1.0
O F:ALA142 4.2 8.8 1.0
O F:HOH629 4.3 24.8 1.0
CG F:HIS144 4.3 9.1 1.0
CD2 F:HIS35 4.4 12.8 1.0
NE2 F:HIS35 4.4 12.8 1.0
C F:HIS35 4.5 8.5 1.0
ND1 F:HIS144 4.5 9.9 1.0
CA F:ALA142 4.6 9.0 1.0
C F:ALA142 4.6 8.9 1.0
O F:HOH561 4.8 21.8 1.0
O F:HOH575 4.9 25.0 1.0
O F:HIS35 4.9 8.1 1.0
CD F:GLU217 4.9 7.8 1.0
N F:ALA142 5.0 8.6 1.0

Copper binding site 7 out of 8 in 4oy7

Go back to Copper Binding Sites List in 4oy7
Copper binding site 7 out of 8 in the Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper. within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cu301

b:8.8
occ:0.50
 O G:HOH448 2.0 12.4 0.5
ND1 G:HIS35 2.1 12.9 1.0
N G:HIS35 2.1 11.8 1.0
NE2 G:HIS144 2.1 11.9 1.0
O G:HOH449 2.4 28.0 1.0
CG G:HIS35 3.0 12.5 1.0
CD2 G:HIS144 3.1 11.4 1.0
CA G:HIS35 3.1 11.3 1.0
CE1 G:HIS35 3.1 13.1 1.0
CE1 G:HIS144 3.1 12.1 1.0
CB G:HIS35 3.3 12.3 1.0
CZ G:PHE219 3.3 8.2 1.0
CB G:ALA142 3.6 12.6 1.0
CE1 G:PHE219 4.0 8.0 1.0
O G:ALA142 4.0 12.0 1.0
OE1 G:GLU217 4.1 9.9 1.0
CE2 G:PHE219 4.1 8.0 1.0
CD2 G:HIS35 4.2 12.9 1.0
NE2 G:HIS35 4.2 12.9 1.0
CG G:HIS144 4.2 11.6 1.0
ND1 G:HIS144 4.2 12.4 1.0
O G:HOH523 4.2 22.8 1.0
C G:HIS35 4.4 10.6 1.0
C G:ALA142 4.6 12.5 1.0
CA G:ALA142 4.6 12.7 1.0
O G:HOH617 4.8 22.3 1.0
O G:HIS35 4.9 11.1 1.0
CD G:GLU217 5.0 9.2 1.0
N G:ALA142 5.0 12.1 1.0

Copper binding site 8 out of 8 in 4oy7

Go back to Copper Binding Sites List in 4oy7
Copper binding site 8 out of 8 in the Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper.


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Structure of Cellulose Active Lpmo CELS2 (SCLPMO10C) in Complex with Copper. within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cu301

b:9.6
occ:0.50
 O H:HOH435 1.8 6.7 0.5
ND1 H:HIS35 2.1 13.4 1.0
N H:HIS35 2.2 10.7 1.0
NE2 H:HIS144 2.2 11.0 1.0
CG H:HIS35 3.1 12.8 1.0
CA H:HIS35 3.2 10.7 1.0
CE1 H:HIS35 3.2 13.9 1.0
CE1 H:HIS144 3.2 11.4 1.0
CD2 H:HIS144 3.2 10.4 1.0
CB H:HIS35 3.3 11.7 1.0
CZ H:PHE219 3.4 7.4 1.0
CB H:ALA142 3.7 11.4 1.0
CE1 H:PHE219 3.9 7.1 1.0
OE1 H:GLU217 4.0 9.9 1.0
O H:ALA142 4.1 10.7 1.0
CD2 H:HIS35 4.2 13.8 1.0
NE2 H:HIS35 4.2 14.2 1.0
CE2 H:PHE219 4.3 7.2 1.0
ND1 H:HIS144 4.3 11.3 1.0
CG H:HIS144 4.3 10.6 1.0
O H:HOH565 4.3 22.7 1.0
C H:HIS35 4.5 10.3 1.0
C H:ALA142 4.6 11.1 1.0
CA H:ALA142 4.7 11.4 1.0
CD H:GLU217 4.8 9.1 1.0
O H:HIS35 5.0 11.0 1.0

Reference:

Z.Forsberg, A.K.Mackenzie, M.Srlie, A.K.Rhr, R.Helland, A.S.Arvai, G.Vaaje-Kolstad, V.G.Eijsink. Structural and Functional Characterization of A Conserved Pair of Bacterial Cellulose-Oxidizing Lytic Polysaccharide Monooxygenases. Proc.Natl.Acad.Sci.Usa V. 111 8446 2014.
ISSN: ESSN 1091-6490
PubMed: 24912171
DOI: 10.1073/PNAS.1402771111
Page generated: Wed Jul 31 03:20:26 2024

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