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Copper in PDB 4m4j: Radiation Damage Study of Cu T6-Insulin - 0.30 Mgy

Protein crystallography data

The structure of Radiation Damage Study of Cu T6-Insulin - 0.30 Mgy, PDB code: 4m4j was solved by C.G.Frankaer, P.Harris, K.Stahl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.75 / 1.90
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 80.650, 80.650, 33.313, 90.00, 90.00, 120.00
R / Rfree (%) 16.9 / 22

Copper Binding Sites:

The binding sites of Copper atom in the Radiation Damage Study of Cu T6-Insulin - 0.30 Mgy (pdb code 4m4j). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Radiation Damage Study of Cu T6-Insulin - 0.30 Mgy, PDB code: 4m4j:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 4m4j

Go back to Copper Binding Sites List in 4m4j
Copper binding site 1 out of 2 in the Radiation Damage Study of Cu T6-Insulin - 0.30 Mgy


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Radiation Damage Study of Cu T6-Insulin - 0.30 Mgy within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu101

b:14.1
occ:0.33
NE2 B:HIS10 2.0 9.8 1.0
O B:HOH206 2.2 22.2 1.0
CE1 B:HIS10 2.9 11.2 1.0
CD2 B:HIS10 3.1 8.4 1.0
O B:HOH211 3.8 25.5 1.0
ND1 B:HIS10 4.0 15.4 1.0
CG B:HIS10 4.2 13.7 1.0
O B:HOH213 4.6 32.2 1.0
O D:HOH224 4.6 41.4 0.3

Copper binding site 2 out of 2 in 4m4j

Go back to Copper Binding Sites List in 4m4j
Copper binding site 2 out of 2 in the Radiation Damage Study of Cu T6-Insulin - 0.30 Mgy


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Radiation Damage Study of Cu T6-Insulin - 0.30 Mgy within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu101

b:18.3
occ:0.33
NE2 D:HIS10 2.0 16.5 1.0
CE1 D:HIS10 3.0 14.8 1.0
CD2 D:HIS10 3.0 12.5 1.0
O D:HOH212 3.5 30.8 0.3
ND1 D:HIS10 4.1 16.3 1.0
CG D:HIS10 4.1 16.2 1.0
O D:HOH220 4.1 36.6 1.0

Reference:

C.G.Frankaer, S.Mossin, K.Stahl, P.Harris. Towards Accurate Structural Characterization of Metal Centres in Protein Crystals: the Structures of Ni and Cu T6 Bovine Insulin Derivatives. Acta Crystallogr.,Sect.D V. 70 110 2014.
ISSN: ISSN 0907-4449
PubMed: 24419384
DOI: 10.1107/S1399004713029040
Page generated: Wed Jul 31 03:14:30 2024

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