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Copper in PDB 4m3h: Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus

Enzymatic activity of Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus

All present enzymatic activity of Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus:
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus, PDB code: 4m3h was solved by M.Gunne, A.Hoeppner, P.-L.Hagedoorn, V.B.Urlacher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.97 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.540, 103.820, 162.260, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 26.8

Copper Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Copper atom in the Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus (pdb code 4m3h). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 11 binding sites of Copper where determined in the Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus, PDB code: 4m3h:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Copper binding site 1 out of 11 in 4m3h

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Copper binding site 1 out of 11 in the Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu401

b:22.6
occ:1.00
 ND1 A:HIS290 1.9 27.8 1.0
ND1 A:HIS228 2.0 22.7 1.0
SG A:CYS285 2.3 19.8 1.0
CG A:HIS290 2.9 22.4 1.0
CE1 A:HIS228 2.9 20.6 1.0
CE1 A:HIS290 3.0 28.6 1.0
CG A:HIS228 3.1 19.5 1.0
CB A:CYS285 3.2 19.0 1.0
CB A:HIS290 3.2 22.3 1.0
SD A:MET295 3.4 29.0 1.0
CB A:HIS228 3.5 17.1 1.0
CA A:HIS228 3.8 18.8 1.0
CB A:VAL287 4.0 21.0 1.0
CD2 A:HIS290 4.0 24.5 1.0
NE2 A:HIS228 4.0 21.0 1.0
NE2 A:HIS290 4.1 25.2 1.0
CG2 A:VAL287 4.1 17.6 1.0
CE A:MET295 4.1 25.1 1.0
CD2 A:HIS228 4.1 15.8 1.0
O A:TYR227 4.3 18.6 1.0
CA A:CYS285 4.6 20.1 1.0
N A:THR229 4.6 20.5 1.0
CA A:HIS290 4.7 21.9 1.0
C A:HIS228 4.8 20.4 1.0
CG A:MET295 4.8 25.9 1.0
CG1 A:VAL287 4.8 20.9 1.0
N A:HIS228 4.8 19.4 1.0
CD2 A:PHE192 4.9 17.2 1.0
N A:VAL287 4.9 21.0 1.0
C A:TYR227 5.0 19.5 1.0

Copper binding site 2 out of 11 in 4m3h

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Copper binding site 2 out of 11 in the Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu402

b:44.6
occ:1.00
 NE2 A:HIS233 2.1 16.2 1.0
NE2 A:HIS284 2.2 20.2 1.0
NE2 C:HIS155 2.3 23.8 1.0
CE1 A:HIS233 2.8 16.1 1.0
CE1 A:HIS284 2.9 19.2 1.0
CE1 C:HIS155 3.2 26.3 1.0
CD2 A:HIS233 3.2 18.9 1.0
CD2 C:HIS155 3.3 23.4 1.0
CD2 A:HIS284 3.3 16.8 1.0
CD2 A:HIS231 3.9 18.8 1.0
ND1 A:HIS233 4.0 19.6 1.0
ND1 A:HIS284 4.1 24.5 1.0
CE A:MET282 4.2 23.4 1.0
NE2 C:HIS99 4.3 22.5 1.0
CG A:HIS233 4.3 19.5 1.0
CG A:HIS284 4.3 21.5 1.0
NE2 A:HIS231 4.3 18.9 1.0
ND1 C:HIS155 4.4 24.6 1.0
CG C:HIS155 4.4 23.6 1.0
CE1 C:HIS99 4.5 25.6 1.0
ND1 C:HIS161 4.6 36.9 1.0
SD A:MET282 4.6 39.1 1.0
CD2 C:HIS99 4.8 26.4 1.0
NE2 A:HIS286 4.8 18.1 1.0
CU C:CU401 5.0 30.6 1.0

Copper binding site 3 out of 11 in 4m3h

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Copper binding site 3 out of 11 in the Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu403

b:40.0
occ:1.00
 NE2 A:HIS101 2.1 26.2 1.0
NE2 A:HIS153 2.1 30.9 1.0
NE2 B:HIS286 2.1 22.3 1.0
CU A:CU404 2.8 50.5 0.4
O B:O403 2.8 9.7 0.4
CE1 A:HIS153 2.9 28.2 1.0
CE1 A:HIS101 2.9 19.3 1.0
CE1 B:HIS286 3.1 18.1 1.0
CD2 B:HIS286 3.1 18.7 1.0
CD2 A:HIS101 3.1 24.8 1.0
CD2 A:HIS153 3.2 30.3 1.0
CD2 A:HIS99 3.4 34.2 1.0
NE2 A:HIS99 3.8 37.7 1.0
ND1 A:HIS153 4.1 29.8 1.0
ND1 A:HIS101 4.1 27.1 1.0
CB A:ALA263 4.2 20.4 1.0
ND1 B:HIS286 4.2 22.3 1.0
CG A:HIS101 4.2 27.4 1.0
CG B:HIS286 4.2 21.6 1.0
CG A:HIS153 4.2 27.9 1.0
NE2 B:HIS231 4.3 28.9 1.0
CE1 A:HIS151 4.3 22.2 1.0
CD2 B:HIS231 4.6 30.0 1.0
CE1 B:HIS231 4.7 25.1 1.0
CG A:HIS99 4.7 35.8 1.0

Copper binding site 4 out of 11 in 4m3h

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Copper binding site 4 out of 11 in the Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu404

b:50.5
occ:0.40
 O B:O403 1.4 9.7 0.4
CU B:CU402 2.5 54.7 1.0
CD2 A:HIS99 2.7 34.2 1.0
NE2 A:HIS99 2.8 37.7 1.0
CU A:CU403 2.8 40.0 1.0
NE2 A:HIS155 2.9 30.6 1.0
CD2 A:HIS155 3.0 28.9 1.0
NE2 B:HIS286 3.4 22.3 1.0
NE2 B:HIS233 3.5 37.9 1.0
CE1 A:HIS153 3.6 28.2 1.0
NE2 A:HIS153 3.6 30.9 1.0
CG A:HIS99 3.7 35.8 1.0
CE1 A:HIS99 3.9 38.9 1.0
NE2 B:HIS231 3.9 28.9 1.0
NE2 B:HIS284 3.9 27.4 1.0
CE1 B:HIS233 4.0 33.9 1.0
CD2 B:HIS286 4.0 18.7 1.0
CD2 B:HIS231 4.1 30.0 1.0
CE1 A:HIS155 4.1 32.2 1.0
CG A:HIS155 4.2 30.1 1.0
ND1 A:HIS99 4.3 39.0 1.0
CE1 B:HIS284 4.3 27.3 1.0
NE2 A:HIS101 4.3 26.2 1.0
CE1 B:HIS286 4.3 18.1 1.0
CD2 B:HIS233 4.6 35.8 1.0
CB A:HIS99 4.6 34.3 1.0
ND1 A:HIS155 4.7 34.7 1.0
ND1 A:HIS153 4.9 29.8 1.0
CE1 B:HIS231 4.9 25.1 1.0
CD2 A:HIS153 4.9 30.3 1.0
CE1 A:HIS101 4.9 19.3 1.0

Copper binding site 5 out of 11 in 4m3h

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Copper binding site 5 out of 11 in the Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu401

b:28.5
occ:1.00
 SG B:CYS285 2.0 26.4 1.0
ND1 B:HIS228 2.0 18.0 1.0
ND1 B:HIS290 2.1 30.9 1.0
CG B:HIS228 3.0 25.5 1.0
CG B:HIS290 3.0 32.1 1.0
CB B:CYS285 3.0 26.8 1.0
CE1 B:HIS228 3.1 28.6 1.0
CE1 B:HIS290 3.1 31.4 1.0
CB B:HIS290 3.3 32.6 1.0
CB B:HIS228 3.3 25.5 1.0
SD B:MET295 3.3 33.3 1.0
CA B:HIS228 3.6 25.7 1.0
CB B:VAL287 4.1 27.1 1.0
CD2 B:HIS228 4.1 23.5 1.0
CD2 B:HIS290 4.1 33.0 1.0
NE2 B:HIS228 4.1 23.6 1.0
CG2 B:VAL287 4.2 27.6 1.0
NE2 B:HIS290 4.2 33.7 1.0
CE B:MET295 4.2 27.3 1.0
O B:TYR227 4.2 25.6 1.0
CA B:CYS285 4.4 26.6 1.0
N B:THR229 4.4 26.7 1.0
C B:HIS228 4.6 27.0 1.0
N B:HIS228 4.7 25.3 1.0
CA B:HIS290 4.8 32.9 1.0
N B:VAL287 4.9 25.2 1.0
CG B:MET295 4.9 35.9 1.0
C B:TYR227 4.9 24.5 1.0
CD2 B:PHE192 4.9 24.5 1.0
CG1 B:VAL287 4.9 28.6 1.0

Copper binding site 6 out of 11 in 4m3h

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Copper binding site 6 out of 11 in the Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu402

b:54.7
occ:1.00
 NE2 B:HIS233 2.2 37.9 1.0
NE2 A:HIS155 2.3 30.6 1.0
NE2 B:HIS284 2.3 27.4 1.0
O B:O403 2.5 9.7 0.4
CU A:CU404 2.5 50.5 0.4
CE1 B:HIS233 3.1 33.9 1.0
CE1 A:HIS155 3.2 32.2 1.0
CE1 B:HIS284 3.3 27.3 1.0
CD2 B:HIS284 3.3 25.2 1.0
CD2 B:HIS233 3.3 35.8 1.0
CD2 A:HIS155 3.4 28.9 1.0
CD2 B:HIS231 4.1 30.0 1.0
CD2 A:HIS161 4.1 38.8 1.0
SD B:MET282 4.2 53.2 1.0
NE2 A:HIS99 4.2 37.7 1.0
ND1 B:HIS233 4.2 35.1 1.0
NE2 B:HIS231 4.3 28.9 1.0
ND1 B:HIS284 4.3 25.4 1.0
ND1 A:HIS155 4.3 34.7 1.0
CG B:HIS233 4.4 33.3 1.0
CG B:HIS284 4.4 26.2 1.0
CG A:HIS155 4.5 30.1 1.0
CD2 A:HIS99 4.6 34.2 1.0
NE2 A:HIS161 4.7 39.4 1.0
CE1 A:HIS99 4.7 38.9 1.0
NE2 B:HIS286 5.0 22.3 1.0

Copper binding site 7 out of 11 in 4m3h

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Copper binding site 7 out of 11 in the Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu404

b:36.1
occ:1.00
 CU B:CU405 2.0 47.9 0.4
NE2 B:HIS101 2.0 23.7 1.0
NE2 B:HIS153 2.1 32.1 1.0
NE2 C:HIS286 2.2 23.8 1.0
CE1 B:HIS101 3.0 23.0 1.0
CD2 B:HIS153 3.0 23.7 1.0
CE1 C:HIS286 3.0 22.5 1.0
CD2 B:HIS101 3.1 20.4 1.0
CE1 B:HIS153 3.1 29.1 1.0
CD2 C:HIS286 3.1 21.8 1.0
O B:O406 3.3 2.0 0.4
CD2 B:HIS99 3.4 32.9 1.0
NE2 B:HIS99 3.7 36.2 1.0
ND1 B:HIS101 4.1 23.3 1.0
CE1 B:HIS151 4.1 29.5 1.0
ND1 C:HIS286 4.2 21.8 1.0
CG B:HIS101 4.2 23.2 1.0
CG B:HIS153 4.2 27.6 1.0
ND1 B:HIS153 4.2 32.0 1.0
CB B:ALA263 4.2 22.7 1.0
CG C:HIS286 4.2 20.7 1.0
NE2 C:HIS231 4.4 24.7 1.0
CD2 C:HIS231 4.5 26.2 1.0
CG B:HIS99 4.7 31.4 1.0
ND1 B:HIS151 4.9 30.1 1.0
CE1 C:HIS231 4.9 24.9 1.0
CE1 B:HIS223 5.0 23.9 1.0

Copper binding site 8 out of 11 in 4m3h

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Copper binding site 8 out of 11 in the Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu405

b:47.9
occ:0.40
 O B:O406 1.4 2.0 0.4
CU B:CU404 2.0 36.1 1.0
NE2 C:HIS286 2.6 23.8 1.0
CD2 B:HIS99 3.0 32.9 1.0
NE2 B:HIS153 3.0 32.1 1.0
NE2 B:HIS99 3.1 36.2 1.0
CU C:CU403 3.1 48.3 1.0
CE1 B:HIS153 3.2 29.1 1.0
CD2 C:HIS286 3.4 21.8 1.0
CE1 C:HIS286 3.6 22.5 1.0
NE2 B:HIS101 3.6 23.7 1.0
CD2 C:HIS231 3.9 26.2 1.0
CD2 B:HIS155 3.9 35.5 1.0
NE2 C:HIS231 3.9 24.7 1.0
NE2 B:HIS155 4.0 39.2 1.0
NE2 C:HIS284 4.0 23.1 1.0
CG B:HIS99 4.1 31.4 1.0
CE1 B:HIS101 4.2 23.0 1.0
CE1 B:HIS99 4.2 36.4 1.0
NE2 C:HIS233 4.2 24.6 1.0
CD2 B:HIS153 4.3 23.7 1.0
CE1 C:HIS284 4.3 24.4 1.0
CG C:HIS286 4.5 20.7 1.0
ND1 B:HIS153 4.5 32.0 1.0
CD2 B:HIS101 4.5 20.4 1.0
ND1 C:HIS286 4.6 21.8 1.0
ND1 B:HIS99 4.7 34.9 1.0
CG C:HIS231 4.8 24.7 1.0
CE1 C:HIS233 4.9 22.8 1.0
CE1 C:HIS231 4.9 24.9 1.0
CD2 C:HIS233 5.0 22.6 1.0

Copper binding site 9 out of 11 in 4m3h

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Copper binding site 9 out of 11 in the Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu401

b:30.6
occ:1.00
 NE2 C:HIS101 2.0 19.4 1.0
NE2 C:HIS153 2.0 17.5 1.0
NE2 A:HIS286 2.1 18.1 1.0
CE1 C:HIS153 2.8 19.8 1.0
CD2 C:HIS101 2.9 15.9 1.0
CE1 A:HIS286 3.0 21.2 1.0
CE1 C:HIS101 3.0 19.1 1.0
CD2 A:HIS286 3.0 17.5 1.0
CD2 C:HIS153 3.2 15.9 1.0
NE2 C:HIS99 3.4 22.5 1.0
CD2 C:HIS99 3.4 26.4 1.0
ND1 C:HIS153 4.0 18.9 1.0
NE2 A:HIS231 4.1 18.9 1.0
CG C:HIS101 4.1 19.9 1.0
ND1 C:HIS101 4.1 19.6 1.0
ND1 A:HIS286 4.1 16.9 1.0
CG A:HIS286 4.2 19.5 1.0
CG C:HIS153 4.2 18.6 1.0
CD2 A:HIS231 4.3 18.8 1.0
CE1 C:HIS151 4.3 14.4 1.0
CB C:ALA263 4.3 13.4 1.0
CE1 A:HIS231 4.7 22.6 1.0
CE1 C:HIS99 4.7 25.6 1.0
CG C:HIS99 4.8 22.4 1.0
CU A:CU402 5.0 44.6 1.0

Copper binding site 10 out of 11 in 4m3h

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Copper binding site 10 out of 11 in the Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 10 of Crystal Structure of Small Laccase SSL1 From Streptomyces Sviceus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu402

b:26.3
occ:1.00
 ND1 C:HIS290 2.1 21.8 1.0
SG C:CYS285 2.2 25.7 1.0
ND1 C:HIS228 2.2 15.1 1.0
CG C:HIS290 3.0 21.1 1.0
CB C:CYS285 3.1 20.6 1.0
CE1 C:HIS228 3.1 17.2 1.0
CE1 C:HIS290 3.1 22.4 1.0
CG C:HIS228 3.2 16.3 1.0
CB C:HIS290 3.3 21.4 1.0
SD C:MET295 3.5 27.3 1.0
CB C:HIS228 3.5 18.4 1.0
CA C:HIS228 3.8 19.3 1.0
CG2 C:VAL287 4.0 20.9 1.0
CB C:VAL287 4.1 23.2 1.0
O C:TYR227 4.1 18.0 1.0
CD2 C:HIS290 4.1 23.1 1.0
NE2 C:HIS290 4.2 21.6 1.0
NE2 C:HIS228 4.3 17.1 1.0
CD2 C:HIS228 4.3 19.1 1.0
CE C:MET295 4.5 25.4 1.0
CA C:CYS285 4.6 21.8 1.0
N C:THR229 4.7 20.6 1.0
N C:HIS228 4.8 18.7 1.0
C C:HIS228 4.8 19.9 1.0
CA C:HIS290 4.8 22.4 1.0
CD2 C:PHE192 4.8 18.1 1.0
C C:TYR227 4.8 18.2 1.0
CG C:MET295 4.9 25.9 1.0
CG1 C:VAL287 4.9 20.3 1.0
CE2 C:PHE192 5.0 17.3 1.0

Reference:

M.Gunne, A.Hoppner, P.L.Hagedoorn, V.B.Urlacher. Structural and Redox Properties of the Small Laccase SSL1 From Streptomyces Sviceus. Febs J. V. 281 4307 2014.
ISSN: ISSN 1742-464X
PubMed: 24548692
DOI: 10.1111/FEBS.12755
Page generated: Wed Jul 31 03:13:53 2024

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