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Copper in PDB 4lsy: Crystal Structure of Copper-Bound L66S Mutant Toxin From Helicobacter Pylori

Protein crystallography data

The structure of Crystal Structure of Copper-Bound L66S Mutant Toxin From Helicobacter Pylori, PDB code: 4lsy was solved by B.J.Lee, H.Im, C.C.Pathak, H.J.Yoon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.04 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 26.740, 83.998, 41.499, 90.00, 104.36, 90.00
R / Rfree (%) 19.9 / 26.1

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Copper-Bound L66S Mutant Toxin From Helicobacter Pylori (pdb code 4lsy). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of Copper-Bound L66S Mutant Toxin From Helicobacter Pylori, PDB code: 4lsy:

Copper binding site 1 out of 1 in 4lsy

Go back to Copper Binding Sites List in 4lsy
Copper binding site 1 out of 1 in the Crystal Structure of Copper-Bound L66S Mutant Toxin From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Copper-Bound L66S Mutant Toxin From Helicobacter Pylori within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu101

b:26.1
occ:1.00
OHB B:FLC100 2.1 20.8 1.0
OE1 B:GLU58 2.2 21.5 1.0
OB1 B:FLC100 2.2 19.2 1.0
NE2 B:HIS84 2.3 25.7 1.0
OG1 B:FLC100 2.4 23.6 1.0
O B:HOH254 2.8 21.1 1.0
CD B:GLU58 2.9 25.7 1.0
CBC B:FLC100 2.9 22.6 1.0
CB B:FLC100 2.9 22.0 1.0
OE2 B:GLU58 3.0 20.2 1.0
CD2 B:HIS84 3.2 29.0 1.0
CE1 B:HIS84 3.3 20.7 1.0
CGC B:FLC100 3.3 24.7 1.0
CG B:FLC100 3.6 19.6 1.0
O B:HOH212 3.9 27.7 1.0
NE2 B:HIS47 4.1 21.2 1.0
OB2 B:FLC100 4.1 24.6 1.0
OA1 B:FLC100 4.1 20.9 1.0
CA B:FLC100 4.2 17.2 1.0
CE1 B:HIS60 4.2 30.2 1.0
CG B:GLU58 4.4 17.6 1.0
CE1 B:HIS47 4.4 20.7 1.0
CG B:HIS84 4.4 31.8 1.0
ND1 B:HIS84 4.4 31.0 1.0
OG2 B:FLC100 4.4 28.7 1.0
CAC B:FLC100 4.6 18.7 1.0
CD2 B:LEU49 5.0 16.7 1.0

Reference:

C.Pathak, H.Im, Y.J.Yang, H.J.Yoon, H.M.Kim, A.R.Kwon, B.J.Lee. Crystal Structure of Apo and Copper Bound HP0894 Toxin From Helicobacter Pylori 26695 and Insight Into Mrnase Activity Biochim.Biophys.Acta V.1834 2579 2013.
ISSN: ISSN 0006-3002
PubMed: 24060809
DOI: 10.1016/J.BBAPAP.2013.09.006
Page generated: Sun Dec 13 11:15:10 2020

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