Copper in PDB 4lej: Crystal Structure of the Korean Pine (Pinus Koraiensis) Vicilin

The structure of Crystal Structure of the Korean Pine (Pinus Koraiensis) Vicilin, PDB code: 4lej was solved by T.C.Jin, Y.Wang, Y.Z.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.27 / 2.40
Space group	I 21 3
Cell size a, b, c (Å), α, β, γ (°)	148.780, 148.780, 148.780, 90.00, 90.00, 90.00
R / Rfree (%)	19.2 / 24.1

The binding sites of Copper atom in the Crystal Structure of the Korean Pine (Pinus Koraiensis) Vicilin (pdb code 4lej). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of the Korean Pine (Pinus Koraiensis) Vicilin, PDB code: 4lej:

Copper binding site 1 out of 1 in the Crystal Structure of the Korean Pine (Pinus Koraiensis) Vicilin


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of the Korean Pine (Pinus Koraiensis) Vicilin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu501 b:71.2 occ:1.00 NE2 A:HIS379 1.9 58.7 1.0 ND1 A:HIS340 2.1 67.6 1.0 SG A:CYS338 2.4 74.7 1.0 CD2 A:HIS379 2.9 49.4 1.0 CE1 A:HIS379 3.0 50.5 1.0 CE1 A:HIS340 3.1 61.5 1.0 CG A:HIS340 3.1 66.8 1.0 OH A:TYR67 3.4 77.0 1.0 CB A:CYS338 3.4 49.5 1.0 CB A:HIS340 3.4 68.8 1.0 CD A:PRO339 3.6 60.4 1.0 N A:HIS340 3.7 67.5 1.0 CA A:CYS338 3.7 57.6 1.0 N A:PRO339 3.9 59.6 1.0 ND1 A:HIS379 4.0 54.4 1.0 CG A:HIS379 4.0 46.2 1.0 C A:CYS338 4.1 66.3 1.0 NE2 A:HIS340 4.2 70.2 1.0 CA A:HIS340 4.2 78.4 1.0 CD2 A:HIS340 4.2 65.7 1.0 CZ A:TYR67 4.3 68.0 1.0 CG A:PRO339 4.4 60.4 1.0 CE2 A:TYR67 4.6 73.5 1.0 C A:PRO339 4.7 66.4 1.0 CA A:PRO339 4.9 59.7 1.0 O A:CYS338 4.9 78.2 1.0

T.Jin, Y.Wang, Y.W.Chen, T.J.Fu, M.H.Kothary, T.H.Mchugh, Y.Zhang. Crystal Structure of Korean Pine (Pinus Koraiensis ) 7S Seed Storage Protein with Copper Ligands. J.Agric.Food Chem. V. 62 222 2014.
ISSN: ISSN 0021-8561
PubMed: 24328105
DOI: 10.1021/JF4039887