Copper in PDB 4kob: Investigating the Functional Significance of the Interlocked Pair Structural Determinants in Pseudomonas Aeruginosa Azurin (V31I/V95I)
Protein crystallography data
The structure of Investigating the Functional Significance of the Interlocked Pair Structural Determinants in Pseudomonas Aeruginosa Azurin (V31I/V95I), PDB code: 4kob
was solved by
K.K.Inampudi,
W.Meng,
P.H.Tobin,
C.J.Wilson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.85 /
1.87
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
53.250,
97.220,
100.600,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17 /
22.6
|
Copper Binding Sites:
The binding sites of Copper atom in the Investigating the Functional Significance of the Interlocked Pair Structural Determinants in Pseudomonas Aeruginosa Azurin (V31I/V95I)
(pdb code 4kob). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the
Investigating the Functional Significance of the Interlocked Pair Structural Determinants in Pseudomonas Aeruginosa Azurin (V31I/V95I), PDB code: 4kob:
Jump to Copper binding site number:
1;
2;
3;
4;
Copper binding site 1 out
of 4 in 4kob
Go back to
Copper Binding Sites List in 4kob
Copper binding site 1 out
of 4 in the Investigating the Functional Significance of the Interlocked Pair Structural Determinants in Pseudomonas Aeruginosa Azurin (V31I/V95I)
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Investigating the Functional Significance of the Interlocked Pair Structural Determinants in Pseudomonas Aeruginosa Azurin (V31I/V95I) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu201
b:18.2
occ:1.00
|
ND1
|
A:HIS46
|
1.9
|
11.6
|
1.0
|
ND1
|
A:HIS117
|
2.1
|
16.5
|
1.0
|
SG
|
A:CYS112
|
2.2
|
15.6
|
1.0
|
O
|
A:GLY45
|
2.6
|
16.5
|
1.0
|
CE1
|
A:HIS46
|
2.8
|
15.1
|
1.0
|
CE1
|
A:HIS117
|
3.0
|
20.4
|
1.0
|
CG
|
A:HIS46
|
3.0
|
14.2
|
1.0
|
CG
|
A:HIS117
|
3.1
|
20.1
|
1.0
|
SD
|
A:MET121
|
3.3
|
17.5
|
1.0
|
CB
|
A:CYS112
|
3.3
|
17.0
|
1.0
|
CA
|
A:HIS46
|
3.3
|
13.1
|
1.0
|
CB
|
A:HIS117
|
3.5
|
19.0
|
1.0
|
CB
|
A:HIS46
|
3.5
|
15.4
|
1.0
|
C
|
A:GLY45
|
3.6
|
18.9
|
1.0
|
CB
|
A:PHE114
|
3.7
|
14.9
|
1.0
|
N
|
A:HIS46
|
3.9
|
11.8
|
1.0
|
NE2
|
A:HIS46
|
4.0
|
13.9
|
1.0
|
CE
|
A:MET121
|
4.0
|
17.3
|
1.0
|
CD2
|
A:HIS46
|
4.1
|
12.5
|
1.0
|
NE2
|
A:HIS117
|
4.1
|
19.5
|
1.0
|
CD2
|
A:HIS117
|
4.2
|
18.8
|
1.0
|
C
|
A:HIS46
|
4.5
|
15.1
|
1.0
|
CG
|
A:PHE114
|
4.6
|
20.6
|
1.0
|
N
|
A:ASN47
|
4.6
|
12.2
|
1.0
|
CA
|
A:CYS112
|
4.7
|
13.7
|
1.0
|
CG
|
A:MET121
|
4.8
|
19.8
|
1.0
|
N
|
A:PHE114
|
4.8
|
17.0
|
1.0
|
CA
|
A:PHE114
|
4.9
|
19.5
|
1.0
|
O
|
A:MET44
|
4.9
|
16.1
|
1.0
|
CA
|
A:GLY45
|
4.9
|
18.2
|
1.0
|
CD2
|
A:PHE114
|
5.0
|
19.2
|
1.0
|
CA
|
A:HIS117
|
5.0
|
17.8
|
1.0
|
|
Copper binding site 2 out
of 4 in 4kob
Go back to
Copper Binding Sites List in 4kob
Copper binding site 2 out
of 4 in the Investigating the Functional Significance of the Interlocked Pair Structural Determinants in Pseudomonas Aeruginosa Azurin (V31I/V95I)
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Investigating the Functional Significance of the Interlocked Pair Structural Determinants in Pseudomonas Aeruginosa Azurin (V31I/V95I) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu201
b:15.0
occ:1.00
|
ND1
|
B:HIS46
|
2.1
|
10.8
|
1.0
|
ND1
|
B:HIS117
|
2.1
|
13.4
|
1.0
|
SG
|
B:CYS112
|
2.2
|
10.7
|
1.0
|
O
|
B:GLY45
|
2.6
|
11.9
|
1.0
|
CE1
|
B:HIS46
|
3.0
|
13.8
|
1.0
|
CE1
|
B:HIS117
|
3.0
|
16.3
|
1.0
|
CG
|
B:HIS117
|
3.1
|
12.0
|
1.0
|
CG
|
B:HIS46
|
3.1
|
12.0
|
1.0
|
CA
|
B:HIS46
|
3.3
|
10.1
|
1.0
|
CB
|
B:CYS112
|
3.3
|
10.2
|
1.0
|
SD
|
B:MET121
|
3.4
|
12.7
|
1.0
|
CB
|
B:HIS117
|
3.4
|
11.1
|
1.0
|
CB
|
B:HIS46
|
3.5
|
11.3
|
1.0
|
C
|
B:GLY45
|
3.6
|
15.0
|
1.0
|
CB
|
B:PHE114
|
3.8
|
11.5
|
1.0
|
CE
|
B:MET121
|
3.9
|
12.6
|
1.0
|
N
|
B:HIS46
|
3.9
|
10.2
|
1.0
|
NE2
|
B:HIS46
|
4.1
|
12.5
|
1.0
|
NE2
|
B:HIS117
|
4.2
|
14.2
|
1.0
|
CD2
|
B:HIS117
|
4.2
|
14.4
|
1.0
|
CD2
|
B:HIS46
|
4.2
|
13.3
|
1.0
|
C
|
B:HIS46
|
4.5
|
10.8
|
1.0
|
N
|
B:ASN47
|
4.6
|
10.9
|
1.0
|
CG
|
B:PHE114
|
4.6
|
14.7
|
1.0
|
CA
|
B:CYS112
|
4.7
|
10.3
|
1.0
|
N
|
B:PHE114
|
4.8
|
12.9
|
1.0
|
CA
|
B:PHE114
|
4.9
|
11.8
|
1.0
|
CA
|
B:HIS117
|
4.9
|
12.0
|
1.0
|
CG
|
B:MET121
|
4.9
|
11.8
|
1.0
|
CA
|
B:GLY45
|
4.9
|
13.4
|
1.0
|
|
Copper binding site 3 out
of 4 in 4kob
Go back to
Copper Binding Sites List in 4kob
Copper binding site 3 out
of 4 in the Investigating the Functional Significance of the Interlocked Pair Structural Determinants in Pseudomonas Aeruginosa Azurin (V31I/V95I)
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Investigating the Functional Significance of the Interlocked Pair Structural Determinants in Pseudomonas Aeruginosa Azurin (V31I/V95I) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu201
b:14.6
occ:1.00
|
ND1
|
C:HIS46
|
2.0
|
8.6
|
1.0
|
ND1
|
C:HIS117
|
2.0
|
11.9
|
1.0
|
SG
|
C:CYS112
|
2.3
|
11.7
|
1.0
|
O
|
C:GLY45
|
2.6
|
12.7
|
1.0
|
CE1
|
C:HIS46
|
2.9
|
11.0
|
1.0
|
CE1
|
C:HIS117
|
3.0
|
13.3
|
1.0
|
CG
|
C:HIS117
|
3.1
|
14.4
|
1.0
|
CG
|
C:HIS46
|
3.1
|
12.1
|
1.0
|
SD
|
C:MET121
|
3.2
|
12.7
|
1.0
|
CB
|
C:CYS112
|
3.3
|
10.9
|
1.0
|
CA
|
C:HIS46
|
3.3
|
10.1
|
1.0
|
CB
|
C:HIS117
|
3.5
|
11.4
|
1.0
|
CB
|
C:HIS46
|
3.5
|
10.5
|
1.0
|
C
|
C:GLY45
|
3.6
|
12.5
|
1.0
|
CE
|
C:MET121
|
3.7
|
11.2
|
1.0
|
CB
|
C:PHE114
|
3.8
|
10.5
|
1.0
|
N
|
C:HIS46
|
3.9
|
11.1
|
1.0
|
NE2
|
C:HIS46
|
4.1
|
13.6
|
1.0
|
NE2
|
C:HIS117
|
4.1
|
14.1
|
1.0
|
CD2
|
C:HIS46
|
4.2
|
14.1
|
1.0
|
CD2
|
C:HIS117
|
4.2
|
13.4
|
1.0
|
C
|
C:HIS46
|
4.5
|
11.1
|
1.0
|
N
|
C:ASN47
|
4.6
|
9.3
|
1.0
|
CG
|
C:PHE114
|
4.6
|
14.2
|
1.0
|
CA
|
C:CYS112
|
4.7
|
10.8
|
1.0
|
CG
|
C:MET121
|
4.7
|
11.4
|
1.0
|
N
|
C:PHE114
|
4.8
|
10.2
|
1.0
|
CA
|
C:PHE114
|
4.9
|
11.0
|
1.0
|
CA
|
C:GLY45
|
4.9
|
13.6
|
1.0
|
CA
|
C:HIS117
|
5.0
|
13.6
|
1.0
|
|
Copper binding site 4 out
of 4 in 4kob
Go back to
Copper Binding Sites List in 4kob
Copper binding site 4 out
of 4 in the Investigating the Functional Significance of the Interlocked Pair Structural Determinants in Pseudomonas Aeruginosa Azurin (V31I/V95I)
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Investigating the Functional Significance of the Interlocked Pair Structural Determinants in Pseudomonas Aeruginosa Azurin (V31I/V95I) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu201
b:17.1
occ:1.00
|
ND1
|
D:HIS46
|
2.0
|
12.3
|
1.0
|
ND1
|
D:HIS117
|
2.1
|
17.2
|
1.0
|
SG
|
D:CYS112
|
2.2
|
14.1
|
1.0
|
O
|
D:GLY45
|
2.7
|
13.3
|
1.0
|
CE1
|
D:HIS46
|
2.9
|
14.6
|
1.0
|
CE1
|
D:HIS117
|
3.0
|
19.3
|
1.0
|
CG
|
D:HIS117
|
3.1
|
16.8
|
1.0
|
CG
|
D:HIS46
|
3.1
|
13.4
|
1.0
|
CB
|
D:CYS112
|
3.3
|
10.8
|
1.0
|
SD
|
D:MET121
|
3.3
|
15.7
|
1.0
|
CA
|
D:HIS46
|
3.3
|
13.5
|
1.0
|
CB
|
D:HIS117
|
3.4
|
12.9
|
1.0
|
CB
|
D:HIS46
|
3.5
|
12.3
|
1.0
|
C
|
D:GLY45
|
3.6
|
14.6
|
1.0
|
CB
|
D:PHE114
|
3.8
|
17.5
|
1.0
|
N
|
D:HIS46
|
3.9
|
10.8
|
1.0
|
CE
|
D:MET121
|
4.0
|
12.7
|
1.0
|
NE2
|
D:HIS46
|
4.1
|
16.1
|
1.0
|
NE2
|
D:HIS117
|
4.1
|
16.8
|
1.0
|
CD2
|
D:HIS46
|
4.2
|
14.0
|
1.0
|
CD2
|
D:HIS117
|
4.2
|
16.1
|
1.0
|
C
|
D:HIS46
|
4.5
|
12.4
|
1.0
|
N
|
D:ASN47
|
4.6
|
12.9
|
1.0
|
CG
|
D:PHE114
|
4.6
|
19.1
|
1.0
|
CA
|
D:CYS112
|
4.7
|
12.8
|
1.0
|
CG
|
D:MET121
|
4.7
|
14.1
|
1.0
|
N
|
D:PHE114
|
4.8
|
16.5
|
1.0
|
CA
|
D:PHE114
|
4.9
|
16.6
|
1.0
|
CA
|
D:HIS117
|
5.0
|
16.4
|
1.0
|
CA
|
D:GLY45
|
5.0
|
14.3
|
1.0
|
|
Reference:
K.K.Inampudi,
W.Meng,
P.H.Tobin,
C.J.Wilson.
Investigating the Functional Significance of the Interlocked Pair Structural Determinants in Pseudomonas Aeruginosa Azurin (V31I/V95I) To Be Published.
Page generated: Wed Jul 31 03:10:46 2024
|