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Copper in PDB 4hip: Crystal Structure of the Pseudomonas Aeruginosa Azurin, H126NO YOH109

Protein crystallography data

The structure of Crystal Structure of the Pseudomonas Aeruginosa Azurin, H126NO YOH109, PDB code: 4hip was solved by N.Herrera, J.J.Warren, H.B.Gray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.50 / 1.90
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.546, 65.804, 73.005, 90.00, 90.00, 90.00
R / Rfree (%) 25 / 31.7

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of the Pseudomonas Aeruginosa Azurin, H126NO YOH109 (pdb code 4hip). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of the Pseudomonas Aeruginosa Azurin, H126NO YOH109, PDB code: 4hip:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 4hip

Go back to Copper Binding Sites List in 4hip
Copper binding site 1 out of 2 in the Crystal Structure of the Pseudomonas Aeruginosa Azurin, H126NO YOH109


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of the Pseudomonas Aeruginosa Azurin, H126NO YOH109 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:22.6
occ:1.00
ND1 A:HIS46 2.0 21.4 1.0
ND1 A:HIS117 2.0 15.8 1.0
SG A:CYS112 2.2 21.4 1.0
O A:GLY45 2.8 25.3 1.0
CE1 A:HIS46 2.9 21.3 1.0
CE1 A:HIS117 3.0 20.9 1.0
CG A:HIS117 3.1 18.3 1.0
CG A:HIS46 3.1 22.5 1.0
SD A:MET121 3.2 22.3 1.0
CB A:CYS112 3.3 19.7 1.0
CB A:HIS117 3.4 19.3 1.0
CA A:HIS46 3.4 21.8 1.0
CB A:HIS46 3.5 20.5 1.0
CE A:MET121 3.6 18.0 1.0
CB A:PHE114 3.8 18.8 1.0
C A:GLY45 3.8 23.5 1.0
N A:HIS46 4.1 21.6 1.0
NE2 A:HIS46 4.1 22.7 1.0
NE2 A:HIS117 4.1 17.5 1.0
CD2 A:HIS46 4.2 21.8 1.0
CD2 A:HIS117 4.2 18.2 1.0
C A:HIS46 4.6 22.6 1.0
N A:ASN47 4.6 22.4 1.0
CA A:CYS112 4.6 20.3 1.0
CG A:PHE114 4.7 21.9 1.0
CG A:MET121 4.7 17.8 1.0
N A:PHE114 4.7 21.6 1.0
CA A:PHE114 4.9 22.0 1.0
CA A:HIS117 4.9 21.1 1.0
CB A:MET121 4.9 18.1 1.0

Copper binding site 2 out of 2 in 4hip

Go back to Copper Binding Sites List in 4hip
Copper binding site 2 out of 2 in the Crystal Structure of the Pseudomonas Aeruginosa Azurin, H126NO YOH109


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of the Pseudomonas Aeruginosa Azurin, H126NO YOH109 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:24.3
occ:1.00
ND1 B:HIS46 1.8 20.1 1.0
ND1 B:HIS117 2.1 21.2 1.0
SG B:CYS112 2.2 26.7 1.0
O B:GLY45 2.8 26.7 1.0
CE1 B:HIS46 2.8 27.5 1.0
CG B:HIS46 3.0 24.4 1.0
CE1 B:HIS117 3.1 21.9 1.0
CG B:HIS117 3.1 21.9 1.0
SD B:MET121 3.1 27.6 1.0
CB B:CYS112 3.2 23.9 1.0
CA B:HIS46 3.3 25.6 1.0
CB B:HIS117 3.4 22.2 1.0
CB B:HIS46 3.5 23.2 1.0
CE B:MET121 3.7 28.2 1.0
C B:GLY45 3.8 27.6 1.0
CB B:PHE114 3.8 24.0 1.0
NE2 B:HIS46 3.9 21.6 1.0
N B:HIS46 4.0 25.9 1.0
CD2 B:HIS46 4.0 19.6 1.0
NE2 B:HIS117 4.2 20.8 1.0
CD2 B:HIS117 4.3 25.3 1.0
C B:HIS46 4.5 25.9 1.0
N B:ASN47 4.5 27.2 1.0
CA B:CYS112 4.6 25.0 1.0
CG B:MET121 4.7 22.4 1.0
CG B:PHE114 4.7 27.6 1.0
N B:PHE114 4.8 23.8 1.0
CB B:MET121 4.9 21.2 1.0
CA B:PHE114 4.9 24.9 1.0
CA B:HIS117 4.9 20.0 1.0

Reference:

J.J.Warren, N.Herrera, M.G.Hill, J.R.Winkler, H.B.Gray. Electron Flow Through Nitrotyrosinate in Pseudomonas Aeruginosa Azurin. J.Am.Chem.Soc. V. 135 11151 2013.
ISSN: ISSN 0002-7863
PubMed: 23859602
DOI: 10.1021/JA403734N
Page generated: Sun Dec 13 11:14:44 2020

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