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Copper in PDB 4hcf: Crystal Structure of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Copper Bound From Bacillus Anthracis

Protein crystallography data

The structure of Crystal Structure of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Copper Bound From Bacillus Anthracis, PDB code: 4hcf was solved by Y.Kim, N.Maltseva, S.Shatsman, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.43 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 38.275, 73.594, 40.366, 90.00, 116.72, 90.00
R / Rfree (%) 17.7 / 21

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Copper Bound From Bacillus Anthracis (pdb code 4hcf). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Copper Bound From Bacillus Anthracis, PDB code: 4hcf:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 4hcf

Go back to Copper Binding Sites List in 4hcf
Copper binding site 1 out of 2 in the Crystal Structure of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Copper Bound From Bacillus Anthracis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Copper Bound From Bacillus Anthracis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:18.2
occ:1.00
ND1 A:HIS78 2.1 17.5 1.0
ND1 A:HIS116 2.1 17.8 1.0
SG A:CYS113 2.2 16.0 1.0
SE A:MSE121 2.6 16.2 0.8
CE1 A:HIS78 3.0 14.8 1.0
CE1 A:HIS116 3.1 18.8 1.0
CG A:HIS78 3.1 17.2 1.0
CG A:HIS116 3.2 18.2 1.0
CB A:CYS113 3.2 13.2 1.0
CB A:HIS116 3.5 18.1 1.0
CB A:HIS78 3.5 16.0 1.0
CE A:MSE121 3.6 18.7 1.0
CA A:HIS78 3.7 16.8 1.0
N A:HIS116 4.0 17.0 1.0
CG A:MSE121 4.0 9.6 1.0
O A:GLU77 4.1 18.5 1.0
NE2 A:HIS78 4.2 15.1 1.0
NE2 A:HIS116 4.2 20.3 1.0
CD2 A:HIS78 4.2 16.8 1.0
CD2 A:HIS116 4.3 18.4 1.0
CA A:HIS116 4.3 17.8 1.0
CB A:TYR115 4.4 20.0 1.0
N A:THR79 4.4 16.1 1.0
CB A:MSE121 4.5 12.8 1.0
C A:HIS78 4.6 17.8 1.0
CA A:CYS113 4.6 12.6 1.0
N A:HIS78 4.7 16.8 1.0
C A:TYR115 4.8 21.1 1.0
OD2 A:ASP51 4.8 21.0 1.0
C A:GLU77 4.8 16.7 1.0
N A:TYR115 4.9 16.6 1.0
CA A:TYR115 4.9 18.0 1.0

Copper binding site 2 out of 2 in 4hcf

Go back to Copper Binding Sites List in 4hcf
Copper binding site 2 out of 2 in the Crystal Structure of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Copper Bound From Bacillus Anthracis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Copper Bound From Bacillus Anthracis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:17.3
occ:1.00
ND1 B:HIS78 2.1 17.3 1.0
SG B:CYS113 2.2 14.8 1.0
ND1 B:HIS116 2.2 21.6 1.0
SE B:MSE121 2.7 19.5 0.8
CE1 B:HIS78 2.9 14.6 1.0
CG B:HIS78 3.1 15.5 1.0
CE1 B:HIS116 3.1 22.0 1.0
CB B:CYS113 3.2 12.7 1.0
CG B:HIS116 3.2 18.9 1.0
CE B:MSE121 3.5 16.9 1.0
CB B:HIS116 3.5 15.8 1.0
CB B:HIS78 3.5 14.7 1.0
CA B:HIS78 3.7 14.7 1.0
N B:HIS116 4.0 18.8 1.0
NE2 B:HIS78 4.1 15.2 1.0
O B:GLU77 4.1 17.7 1.0
CG B:MSE121 4.1 11.9 1.0
CD2 B:HIS78 4.2 13.2 1.0
NE2 B:HIS116 4.3 22.8 1.0
N B:THR79 4.3 14.1 1.0
CD2 B:HIS116 4.3 18.5 1.0
CA B:HIS116 4.4 17.9 1.0
CB B:TYR115 4.4 19.7 1.0
C B:HIS78 4.6 13.3 1.0
CB B:MSE121 4.6 13.9 1.0
CA B:CYS113 4.6 13.5 1.0
N B:HIS78 4.8 16.6 1.0
OD1 B:ASP51 4.8 21.7 1.0
C B:TYR115 4.8 18.6 1.0
C B:GLU77 4.8 18.8 1.0
CD2 B:TYR115 4.9 20.3 1.0
N B:TYR115 5.0 14.2 1.0

Reference:

Y.Kim, N.Maltseva, S.Shatsman, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Uncharacterized Cupredoxin-Like Domain Protein CUPREDOXIN_1 with Copper Bound From Bacillus Anthracis To Be Published.
Page generated: Wed Jul 31 03:01:24 2024

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