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Copper in PDB 4gf6: Crystal Structure of Gfp with Cuprum Bound at the Incorporated Metal Chelating Amino Acid PYZ151

Protein crystallography data

The structure of Crystal Structure of Gfp with Cuprum Bound at the Incorporated Metal Chelating Amino Acid PYZ151, PDB code: 4gf6 was solved by J.Dong, X.Liu, J.Li, J.Wang, W.Gong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.827, 63.052, 70.369, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 17.9

Other elements in 4gf6:

The structure of Crystal Structure of Gfp with Cuprum Bound at the Incorporated Metal Chelating Amino Acid PYZ151 also contains other interesting chemical elements:

Calcium (Ca) 5 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Gfp with Cuprum Bound at the Incorporated Metal Chelating Amino Acid PYZ151 (pdb code 4gf6). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of Gfp with Cuprum Bound at the Incorporated Metal Chelating Amino Acid PYZ151, PDB code: 4gf6:

Copper binding site 1 out of 1 in 4gf6

Go back to Copper Binding Sites List in 4gf6
Copper binding site 1 out of 1 in the Crystal Structure of Gfp with Cuprum Bound at the Incorporated Metal Chelating Amino Acid PYZ151


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Gfp with Cuprum Bound at the Incorporated Metal Chelating Amino Acid PYZ151 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu301

b:18.3
occ:0.70
OH B:0WZ151 1.9 16.8 1.0
N1 B:0WZ151 2.0 16.8 1.0
CZ B:0WZ151 2.9 13.9 1.0
N2 B:0WZ151 2.9 15.7 1.0
C5 B:0WZ151 3.0 17.4 1.0
CE2 B:0WZ151 3.3 14.1 1.0
C3 B:0WZ151 4.1 16.6 1.0
CE1 B:0WZ151 4.1 14.7 1.0
C4 B:0WZ151 4.2 16.6 1.0
CE2 B:TYR200 4.2 12.7 1.0
CD2 B:TYR200 4.3 10.9 1.0
CD2 B:0WZ151 4.7 13.2 1.0

Reference:

X.Liu, J.Li, J.Dong, C.Hu, W.Gong, J.Wang. Genetic Incorporation of A Metal-Chelating Amino Acid As A Probe For Protein Electron Transfer. Angew.Chem.Int.Ed.Engl. V. 51 10261 2012.
ISSN: ISSN 1433-7851
PubMed: 22936654
DOI: 10.1002/ANIE.201204962
Page generated: Sun Dec 13 11:14:30 2020

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