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Copper in PDB 4g70: Structure of Recombinant Cytochrome BA3 Oxidase Mutant V236T From Thermus Thermophilus

Enzymatic activity of Structure of Recombinant Cytochrome BA3 Oxidase Mutant V236T From Thermus Thermophilus

All present enzymatic activity of Structure of Recombinant Cytochrome BA3 Oxidase Mutant V236T From Thermus Thermophilus:
1.9.3.1;

Protein crystallography data

The structure of Structure of Recombinant Cytochrome BA3 Oxidase Mutant V236T From Thermus Thermophilus, PDB code: 4g70 was solved by Y.Li, Y.Chen, C.D.Stout, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 75.30 / 2.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 143.480, 98.360, 94.780, 90.00, 127.39, 90.00
R / Rfree (%) 19.4 / 25.2

Other elements in 4g70:

The structure of Structure of Recombinant Cytochrome BA3 Oxidase Mutant V236T From Thermus Thermophilus also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Structure of Recombinant Cytochrome BA3 Oxidase Mutant V236T From Thermus Thermophilus (pdb code 4g70). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Structure of Recombinant Cytochrome BA3 Oxidase Mutant V236T From Thermus Thermophilus, PDB code: 4g70:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 4g70

Go back to Copper Binding Sites List in 4g70
Copper binding site 1 out of 3 in the Structure of Recombinant Cytochrome BA3 Oxidase Mutant V236T From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of Recombinant Cytochrome BA3 Oxidase Mutant V236T From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu603

b:27.1
occ:1.00
ND1 A:HIS233 1.8 27.4 1.0
NE2 A:HIS282 2.0 22.6 1.0
NE2 A:HIS283 2.0 22.9 1.0
O2 A:PER604 2.3 29.4 1.0
O1 A:PER604 2.6 27.2 1.0
CG A:HIS233 2.7 26.8 1.0
CE1 A:HIS233 2.8 27.5 1.0
CE1 A:HIS282 2.9 23.5 1.0
CD2 A:HIS283 2.9 24.2 1.0
CE1 A:HIS283 3.0 23.2 1.0
CD2 A:HIS282 3.0 21.7 1.0
CB A:HIS233 3.0 24.6 1.0
CA A:HIS233 3.7 24.7 1.0
CD2 A:HIS233 3.9 26.2 1.0
NE2 A:HIS233 3.9 27.3 1.0
ND1 A:HIS283 4.1 24.1 1.0
CG A:HIS283 4.1 23.3 1.0
ND1 A:HIS282 4.1 22.9 1.0
CG A:HIS282 4.2 22.3 1.0
C1D A:HAS602 4.2 24.2 1.0
C2D A:HAS602 4.3 25.6 1.0
C4D A:HAS602 4.5 23.1 1.0
N A:HIS233 4.6 24.9 1.0
C A:HIS233 4.6 27.6 1.0
ND A:HAS602 4.6 23.7 1.0
C3D A:HAS602 4.6 23.8 1.0
CHB A:HAS602 4.6 26.1 1.0
O A:HIS233 4.7 27.1 1.0
FE A:HAS602 4.8 26.7 1.0
CHA A:HAS602 4.9 21.4 1.0
OG1 A:THR236 5.0 21.7 1.0

Copper binding site 2 out of 3 in 4g70

Go back to Copper Binding Sites List in 4g70
Copper binding site 2 out of 3 in the Structure of Recombinant Cytochrome BA3 Oxidase Mutant V236T From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of Recombinant Cytochrome BA3 Oxidase Mutant V236T From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:24.5
occ:1.00
CU1 B:CUA201 0.0 24.5 1.0
ND1 B:HIS157 2.0 20.7 1.0
SG B:CYS153 2.2 25.3 1.0
SG B:CYS149 2.3 22.3 1.0
O B:GLN151 2.5 22.4 1.0
CU2 B:CUA201 2.6 26.3 1.0
CE1 B:HIS157 2.8 20.3 1.0
CG B:HIS157 3.2 22.8 1.0
CB B:CYS149 3.2 20.6 1.0
CB B:CYS153 3.4 21.9 1.0
C B:GLN151 3.5 22.4 1.0
N B:CYS153 3.5 23.9 1.0
CB B:HIS157 3.7 25.7 1.0
CA B:HIS157 3.8 26.4 1.0
O B:CYS149 3.9 27.2 1.0
NE2 B:HIS157 4.0 21.9 1.0
C B:TYR152 4.0 24.1 1.0
CA B:CYS153 4.1 23.6 1.0
CA B:TYR152 4.1 23.1 1.0
C B:CYS149 4.1 25.0 1.0
N B:TYR152 4.2 22.0 1.0
CD2 B:HIS157 4.2 21.2 1.0
N B:GLN151 4.2 23.6 1.0
O B:HIS157 4.2 28.3 1.0
CA B:CYS149 4.3 22.2 1.0
ND1 B:HIS114 4.4 24.1 1.0
CA B:GLN151 4.4 23.5 1.0
C B:HIS157 4.5 27.8 1.0
SD B:MET160 4.5 26.0 1.0
CB B:MET160 4.8 22.1 1.0
N B:ASN150 4.9 26.5 1.0
O B:TYR152 4.9 27.9 1.0
O B:HOH315 5.0 24.7 1.0

Copper binding site 3 out of 3 in 4g70

Go back to Copper Binding Sites List in 4g70
Copper binding site 3 out of 3 in the Structure of Recombinant Cytochrome BA3 Oxidase Mutant V236T From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Structure of Recombinant Cytochrome BA3 Oxidase Mutant V236T From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:26.3
occ:1.00
CU2 B:CUA201 0.0 26.3 1.0
ND1 B:HIS114 2.0 24.1 1.0
SG B:CYS153 2.2 25.3 1.0
SG B:CYS149 2.2 22.3 1.0
SD B:MET160 2.3 26.0 1.0
CU1 B:CUA201 2.6 24.5 1.0
CE1 B:HIS114 2.9 23.7 1.0
CG B:HIS114 3.0 24.9 1.0
CB B:CYS153 3.2 21.9 1.0
CB B:CYS149 3.2 20.6 1.0
CE B:MET160 3.3 24.1 1.0
CB B:HIS114 3.4 24.6 1.0
CG B:MET160 3.7 23.9 1.0
CA B:HIS114 4.0 25.1 1.0
NE2 B:HIS114 4.1 25.5 1.0
CB B:MET160 4.1 22.1 1.0
O B:GLN151 4.1 22.4 1.0
CD2 B:HIS114 4.2 26.4 1.0
ND1 B:HIS157 4.6 20.7 1.0
CA B:CYS153 4.6 23.6 1.0
CD2 B:PHE88 4.6 26.5 1.0
N B:GLY115 4.6 26.3 1.0
CA B:CYS149 4.6 22.2 1.0
O B:ILE113 4.7 24.6 1.0
N B:CYS153 4.8 23.9 1.0
C B:HIS114 4.9 24.6 1.0
O B:PHE86 4.9 23.6 1.0

Reference:

Y.Li, Y.Chen, C.D.Stout. Structure of Recombinant Cytochrome BA3 Oxidase Mutant V236T From Thermus Thermophilus To Be Published.
Page generated: Sun Dec 13 11:14:25 2020

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