Atomistry » Copper » PDB 4e9v-4hd7 » 4fwy
Atomistry »
  Copper »
    PDB 4e9v-4hd7 »
      4fwy »

Copper in PDB 4fwy: F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound

Protein crystallography data

The structure of F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound, PDB code: 4fwy was solved by Y.-G.Gao, H.Robinson, I.D.Petrik, K.D.Miner, Y.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.01 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.734, 48.286, 77.691, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 24.6

Other elements in 4fwy:

The structure of F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound also contains other interesting chemical elements:

Iron (Fe) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound (pdb code 4fwy). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 5 binding sites of Copper where determined in the F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound, PDB code: 4fwy:
Jump to Copper binding site number: 1; 2; 3; 4; 5;

Copper binding site 1 out of 5 in 4fwy

Go back to Copper Binding Sites List in 4fwy
Copper binding site 1 out of 5 in the F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu202

b:38.4
occ:1.00
NE2 A:HIS29 2.1 33.9 1.0
NE2 A:HIS64 2.2 31.5 1.0
O A:HOH342 2.6 33.3 1.0
NE2 A:HIS43 2.7 78.8 1.0
CE1 A:HIS43 2.8 68.7 1.0
CD2 A:HIS29 3.0 30.3 1.0
CD2 A:HIS64 3.0 30.8 1.0
CE1 A:HIS29 3.2 35.5 1.0
CE1 A:HIS64 3.3 30.0 1.0
CD2 A:HIS43 3.8 79.9 1.0
OH A:TYR33 3.8 47.1 1.0
ND1 A:HIS43 3.9 75.0 1.0
CG2 A:VAL68 4.0 25.2 1.0
CG A:HIS64 4.2 27.8 1.0
CG A:HIS29 4.2 30.9 1.0
ND1 A:HIS29 4.3 34.6 1.0
ND1 A:HIS64 4.3 33.5 1.0
CG A:HIS43 4.4 77.2 1.0
NC A:HEM201 4.8 27.4 1.0
CZ A:TYR33 4.9 43.8 1.0
C4C A:HEM201 4.9 29.6 1.0

Copper binding site 2 out of 5 in 4fwy

Go back to Copper Binding Sites List in 4fwy
Copper binding site 2 out of 5 in the F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu203

b:35.6
occ:1.00
NE2 A:HIS119 1.7 34.0 1.0
NE2 A:HIS24 2.0 24.3 1.0
CD2 A:HIS119 2.6 35.0 1.0
CE1 A:HIS119 2.7 27.3 1.0
CE1 A:HIS24 3.0 28.0 1.0
CD2 A:HIS24 3.0 24.8 1.0
O A:HOH333 3.7 36.5 1.0
CB A:ARG118 3.7 23.9 1.0
CG A:HIS119 3.7 35.5 1.0
ND1 A:HIS119 3.8 35.4 1.0
CD A:ARG118 3.8 25.5 1.0
O A:LYS16 4.1 27.6 1.0
ND1 A:HIS24 4.2 23.8 1.0
C A:LYS16 4.2 25.4 1.0
CB A:LYS16 4.2 31.1 1.0
CG A:HIS24 4.2 26.5 1.0
CD2 A:LEU115 4.3 24.1 1.0
N A:VAL17 4.4 24.0 1.0
CG A:ARG118 4.4 26.9 1.0
CA A:VAL17 4.5 24.9 1.0
CA A:LYS16 4.9 27.1 1.0
CG2 A:VAL17 5.0 26.1 1.0
CA A:ARG118 5.0 26.5 1.0

Copper binding site 3 out of 5 in 4fwy

Go back to Copper Binding Sites List in 4fwy
Copper binding site 3 out of 5 in the F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu204

b:79.3
occ:1.00
OD2 A:ASP122 2.2 34.3 1.0
NE2 A:HIS12 2.5 33.2 1.0
OD1 A:ASP122 2.7 49.8 1.0
CG A:ASP122 2.8 48.2 1.0
CE1 A:HIS12 2.9 33.7 1.0
CD2 A:HIS12 3.7 32.1 1.0
ND1 A:HIS12 4.2 33.9 1.0
CB A:ASP122 4.3 52.3 1.0
CG A:HIS12 4.6 31.0 1.0
CE A:LYS16 4.9 54.6 1.0
CA A:ASP122 4.9 51.6 1.0

Copper binding site 4 out of 5 in 4fwy

Go back to Copper Binding Sites List in 4fwy
Copper binding site 4 out of 5 in the F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu205

b:47.4
occ:1.00
NE2 A:HIS116 2.1 40.0 1.0
O A:HOH324 2.5 42.7 1.0
CD2 A:HIS116 2.9 41.6 1.0
CE1 A:HIS116 3.2 42.4 1.0
CG A:HIS116 4.1 38.0 1.0
ND1 A:HIS116 4.3 38.4 1.0

Copper binding site 5 out of 5 in 4fwy

Go back to Copper Binding Sites List in 4fwy
Copper binding site 5 out of 5 in the F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of F33Y Cub Myoglobin (F33Y L29H F43H Sperm Whale Myoglobin) with Copper Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu206

b:82.9
occ:1.00
ND1 A:HIS81 2.6 44.6 1.0
CG A:HIS81 3.5 36.6 1.0
CB A:HIS81 3.6 33.5 1.0
CE1 A:HIS81 3.6 39.6 1.0
O A:HOH344 3.7 35.0 1.0
CA A:HIS81 4.0 27.5 1.0
CD2 A:HIS81 4.7 42.7 1.0
NE2 A:HIS81 4.8 42.7 1.0
C A:HIS81 4.9 25.2 1.0

Reference:

K.D.Miner, A.Mukherjee, Y.G.Gao, E.L.Null, I.D.Petrik, X.Zhao, N.Yeung, H.Robinson, Y.Lu. A Designed Functional Metalloenzyme That Reduces O(2) to H(2) O with Over One Thousand Turnovers. Angew.Chem.Int.Ed.Engl. V. 51 5589 2012.
ISSN: ISSN 1433-7851
PubMed: 22539151
DOI: 10.1002/ANIE.201201981
Page generated: Sun Dec 13 11:14:24 2020

Last articles

Zn in 7NA9
Zn in 7LZP
Zn in 7M1H
Zn in 7L6V
Zn in 7CM0
V in 7P8R
Ni in 7L19
Na in 7T88
Na in 7MJ5
Na in 7L00
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy