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Copper in PDB 4faa: Structure of Recombinant Cytochrome BA3 Oxidase Mutant A120F+A204F From Thermus Thermophilus

Enzymatic activity of Structure of Recombinant Cytochrome BA3 Oxidase Mutant A120F+A204F From Thermus Thermophilus

All present enzymatic activity of Structure of Recombinant Cytochrome BA3 Oxidase Mutant A120F+A204F From Thermus Thermophilus:
1.9.3.1;

Protein crystallography data

The structure of Structure of Recombinant Cytochrome BA3 Oxidase Mutant A120F+A204F From Thermus Thermophilus, PDB code: 4faa was solved by Y.Li, Y.Chen, C.D.Stout, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.84 / 2.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 143.280, 98.290, 95.050, 90.00, 127.50, 90.00
R / Rfree (%) 19.4 / 25.4

Other elements in 4faa:

The structure of Structure of Recombinant Cytochrome BA3 Oxidase Mutant A120F+A204F From Thermus Thermophilus also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Structure of Recombinant Cytochrome BA3 Oxidase Mutant A120F+A204F From Thermus Thermophilus (pdb code 4faa). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Structure of Recombinant Cytochrome BA3 Oxidase Mutant A120F+A204F From Thermus Thermophilus, PDB code: 4faa:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 4faa

Go back to Copper Binding Sites List in 4faa
Copper binding site 1 out of 3 in the Structure of Recombinant Cytochrome BA3 Oxidase Mutant A120F+A204F From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of Recombinant Cytochrome BA3 Oxidase Mutant A120F+A204F From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu601

b:25.2
occ:1.00
 ND1 A:HIS233 1.9 21.9 1.0
NE2 A:HIS283 2.2 25.6 1.0
NE2 A:HIS282 2.3 22.3 1.0
O2 A:PEO604 2.5 25.3 1.0
O1 A:PEO604 2.6 19.5 1.0
CE1 A:HIS283 2.8 21.6 1.0
CE1 A:HIS233 2.9 26.3 1.0
CG A:HIS233 2.9 25.9 1.0
CD2 A:HIS283 3.1 26.9 1.0
CD2 A:HIS282 3.1 23.6 1.0
CB A:HIS233 3.3 25.9 1.0
CE1 A:HIS282 3.4 23.3 1.0
ND1 A:HIS283 3.8 22.5 1.0
CA A:HIS233 3.8 27.8 1.0
NE2 A:HIS233 4.0 29.5 1.0
CG A:HIS283 4.0 24.5 1.0
CD2 A:HIS233 4.0 26.3 1.0
C4D A:HAS603 4.3 24.7 1.0
CG A:HIS282 4.4 28.6 1.0
C2D A:HAS603 4.4 22.5 1.0
C3D A:HAS603 4.4 21.8 1.0
C1D A:HAS603 4.4 21.9 1.0
ND1 A:HIS282 4.4 26.8 1.0
ND A:HAS603 4.6 22.2 1.0
N A:HIS233 4.7 29.0 1.0
CHA A:HAS603 4.7 22.3 1.0
O A:GLY232 4.8 26.4 1.0
C A:HIS233 4.9 27.4 1.0
CHB A:HAS603 4.9 21.6 1.0
FE A:HAS603 4.9 22.3 1.0

Copper binding site 2 out of 3 in 4faa

Go back to Copper Binding Sites List in 4faa
Copper binding site 2 out of 3 in the Structure of Recombinant Cytochrome BA3 Oxidase Mutant A120F+A204F From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of Recombinant Cytochrome BA3 Oxidase Mutant A120F+A204F From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:24.8
occ:1.00
 CU1 B:CUA201 0.0 24.8 1.0
ND1 B:HIS157 2.3 21.3 1.0
SG B:CYS149 2.4 22.5 1.0
SG B:CYS153 2.5 24.0 1.0
CU2 B:CUA201 2.7 21.2 1.0
O B:GLN151 2.8 23.9 1.0
CE1 B:HIS157 3.1 20.7 1.0
CG B:HIS157 3.2 23.1 1.0
CB B:CYS153 3.5 23.3 1.0
N B:CYS153 3.5 20.7 1.0
CB B:CYS149 3.5 20.4 1.0
C B:GLN151 3.5 22.3 1.0
CB B:HIS157 3.6 22.0 1.0
CA B:HIS157 3.7 20.6 1.0
C B:TYR152 3.9 23.1 1.0
CA B:TYR152 4.0 23.3 1.0
N B:TYR152 4.0 21.9 1.0
O B:CYS149 4.1 27.6 1.0
CA B:CYS153 4.1 22.2 1.0
NE2 B:HIS157 4.2 24.9 1.0
CD2 B:HIS157 4.3 23.2 1.0
N B:GLN151 4.3 22.4 1.0
C B:CYS149 4.3 27.0 1.0
O B:HIS157 4.4 22.2 1.0
ND1 B:HIS114 4.4 22.7 1.0
CA B:GLN151 4.5 23.0 1.0
C B:HIS157 4.5 21.8 1.0
CA B:CYS149 4.6 21.0 1.0
N B:HIS157 4.8 24.5 1.0
O B:TYR152 4.8 19.8 1.0
SD B:MET160 4.9 24.1 1.0
N B:ASN150 4.9 25.1 1.0

Copper binding site 3 out of 3 in 4faa

Go back to Copper Binding Sites List in 4faa
Copper binding site 3 out of 3 in the Structure of Recombinant Cytochrome BA3 Oxidase Mutant A120F+A204F From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Structure of Recombinant Cytochrome BA3 Oxidase Mutant A120F+A204F From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:21.2
occ:1.00
 CU2 B:CUA201 0.0 21.2 1.0
ND1 B:HIS114 2.1 22.7 1.0
SG B:CYS149 2.4 22.5 1.0
SG B:CYS153 2.5 24.0 1.0
SD B:MET160 2.7 24.1 1.0
CU1 B:CUA201 2.7 24.8 1.0
CE1 B:HIS114 2.7 22.1 1.0
CG B:HIS114 3.3 25.3 1.0
CE B:MET160 3.3 23.3 1.0
CB B:CYS149 3.4 20.4 1.0
CB B:CYS153 3.5 23.3 1.0
CG B:MET160 3.8 22.1 1.0
CB B:HIS114 3.9 29.7 1.0
NE2 B:HIS114 4.0 23.3 1.0
CA B:HIS114 4.2 25.0 1.0
CD2 B:HIS114 4.2 25.6 1.0
O B:GLN151 4.3 23.9 1.0
CB B:MET160 4.4 22.3 1.0
O B:ILE113 4.7 26.9 1.0
O B:PHE86 4.7 26.3 1.0
CA B:CYS149 4.8 21.0 1.0
ND1 B:HIS157 4.8 21.3 1.0
CD2 B:PHE88 4.8 30.5 1.0
CA B:CYS153 4.8 22.2 1.0
N B:GLY115 4.9 26.9 1.0
OH B:TYR90 5.0 24.9 1.0

Reference:

Y.Li, Y.Chen, C.D.Stout. N/A N/A.
Page generated: Wed Jul 31 02:55:22 2024

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