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Copper in PDB 4f2e: Crystal Structure of the Streptococcus Pneumoniae D39 Copper Chaperone Cupa with Cu(I)

Protein crystallography data

The structure of Crystal Structure of the Streptococcus Pneumoniae D39 Copper Chaperone Cupa with Cu(I), PDB code: 4f2e was solved by Y.Fu, C.E.Dann Iii, D.P.Giedroc, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.00 / 1.45
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 47.208, 78.647, 23.455, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 20

Other elements in 4f2e:

The structure of Crystal Structure of the Streptococcus Pneumoniae D39 Copper Chaperone Cupa with Cu(I) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of the Streptococcus Pneumoniae D39 Copper Chaperone Cupa with Cu(I) (pdb code 4f2e). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of the Streptococcus Pneumoniae D39 Copper Chaperone Cupa with Cu(I), PDB code: 4f2e:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 4f2e

Go back to Copper Binding Sites List in 4f2e
Copper binding site 1 out of 2 in the Crystal Structure of the Streptococcus Pneumoniae D39 Copper Chaperone Cupa with Cu(I)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of the Streptococcus Pneumoniae D39 Copper Chaperone Cupa with Cu(I) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:12.4
occ:1.00
SG A:CYS74 2.2 10.9 1.0
SG A:CYS111 2.2 10.1 1.0
O A:CYS74 2.2 11.6 1.0
C A:CYS74 3.0 11.4 1.0
CB A:CYS111 3.1 10.8 1.0
CU A:CU1202 3.1 13.4 1.0
CB A:CYS74 3.3 10.1 1.0
CA A:CYS74 3.4 10.4 1.0
CG A:MET116 3.7 15.2 1.0
CB A:MET115 3.8 10.1 1.0
CB A:MET113 3.9 11.8 1.0
CG A:MET113 4.0 12.8 1.0
N A:LEU75 4.1 11.4 1.0
SD A:MET113 4.2 11.8 1.0
N A:MET116 4.2 10.9 1.0
O A:HOH301 4.4 12.3 1.0
CB A:MET116 4.4 12.1 1.0
N A:MET115 4.5 10.5 1.0
N A:MET113 4.5 10.4 1.0
CA A:CYS111 4.5 10.1 1.0
CA A:MET115 4.6 10.1 1.0
CG A:MET115 4.6 11.8 1.0
CA A:LEU75 4.6 11.8 1.0
SD A:MET115 4.6 11.7 1.0
CD2 A:LEU75 4.6 12.0 1.0
CA A:MET113 4.7 11.4 1.0
C A:MET115 4.8 11.6 1.0
N A:CYS74 4.8 10.8 1.0
C A:CYS111 4.9 10.9 1.0
CG A:LEU75 4.9 11.3 1.0
CA A:MET116 5.0 10.1 1.0

Copper binding site 2 out of 2 in 4f2e

Go back to Copper Binding Sites List in 4f2e
Copper binding site 2 out of 2 in the Crystal Structure of the Streptococcus Pneumoniae D39 Copper Chaperone Cupa with Cu(I)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of the Streptococcus Pneumoniae D39 Copper Chaperone Cupa with Cu(I) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu202

b:13.4
occ:1.00
SG A:CYS74 2.3 10.9 1.0
SD A:MET113 2.3 11.8 1.0
SD A:MET115 2.3 11.7 1.0
CL A:CL203 2.3 10.5 0.5
CU A:CU1201 3.1 12.4 1.0
CB A:CYS74 3.2 10.1 1.0
CE A:MET115 3.3 12.3 1.0
CE A:MET113 3.3 13.5 1.0
CG A:MET113 3.4 12.8 1.0
CG A:MET115 3.5 11.8 1.0
CB A:MET113 3.6 11.8 1.0
CA A:CYS74 3.6 10.4 1.0
CB A:MET115 3.7 10.1 1.0
O A:HOH365 4.2 21.8 1.0
O A:CYS74 4.3 11.6 1.0
C A:CYS74 4.5 11.4 1.0
N A:CYS74 4.8 10.8 1.0
SG A:CYS111 4.8 10.1 1.0

Reference:

Y.Fu, H.C.Tsui, K.E.Bruce, L.T.Sham, K.A.Higgins, J.P.Lisher, K.M.Kazmierczak, M.J.Maroney, C.E.Dann, M.E.Winkler, D.P.Giedroc. A New Structural Paradigm in Copper Resistance in Streptococcus Pneumoniae. Nat.Chem.Biol. V. 9 177 2013.
ISSN: ISSN 1552-4450
PubMed: 23354287
DOI: 10.1038/NCHEMBIO.1168
Page generated: Sun Dec 13 11:14:18 2020

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