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Copper in PDB 4d87: Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Sds

Enzymatic activity of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Sds

All present enzymatic activity of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Sds:
1.14.18.1;

Protein crystallography data

The structure of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Sds, PDB code: 4d87 was solved by N.Adir, M.Goldfeder, A.Fishman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 83.50 / 3.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.840, 79.140, 85.930, 90.00, 103.56, 90.00
R / Rfree (%) 25.9 / 29.3

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Sds (pdb code 4d87). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Sds, PDB code: 4d87:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 4d87

Go back to Copper Binding Sites List in 4d87
Copper binding site 1 out of 2 in the Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Sds


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Sds within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu401

b:22.8
occ:0.60
NE2 A:HIS60 1.5 19.6 1.0
NE2 A:HIS42 1.6 37.6 1.0
NE2 A:HIS69 1.8 15.2 1.0
CE1 A:HIS42 2.0 38.2 1.0
CE1 A:HIS69 2.2 11.8 1.0
CE1 A:HIS60 2.2 21.4 1.0
CD2 A:HIS60 2.6 17.6 1.0
CD2 A:HIS42 2.9 24.9 1.0
CD2 A:HIS69 3.2 11.8 1.0
ND1 A:HIS42 3.3 25.5 1.0
ND1 A:HIS60 3.4 19.7 1.0
ND1 A:HIS69 3.5 10.4 1.0
CG A:HIS60 3.6 19.9 1.0
CG A:HIS42 3.7 25.0 1.0
CG A:HIS69 4.0 7.4 1.0
CB A:ALA59 4.2 9.8 1.0
CZ A:PHE227 4.3 10.2 1.0
NE2 A:HIS231 4.3 7.1 1.0
CE1 A:HIS231 4.5 9.1 1.0
CE2 A:PHE227 4.6 9.6 1.0
CE1 A:PHE65 4.6 9.9 1.0
CZ3 A:TRP68 4.7 10.8 1.0
CD1 A:PHE65 4.9 9.4 1.0

Copper binding site 2 out of 2 in 4d87

Go back to Copper Binding Sites List in 4d87
Copper binding site 2 out of 2 in the Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Sds


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Tyrosinase From Bacillus Megaterium in Complex with Sds within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu401

b:30.1
occ:0.60
NE2 B:HIS60 2.2 33.4 1.0
NE2 B:HIS42 2.5 19.2 1.0
NE2 B:HIS69 2.9 11.4 1.0
CD2 B:HIS60 3.0 30.6 1.0
CE1 B:HIS42 3.1 17.1 1.0
CE1 B:HIS60 3.3 29.9 1.0
NE2 B:HIS231 3.5 10.7 1.0
CE1 B:HIS69 3.6 11.8 1.0
CD2 B:HIS42 3.7 15.7 1.0
CZ B:PHE227 3.8 16.5 1.0
CD2 B:HIS69 3.9 9.2 1.0
CE2 B:PHE227 3.9 16.5 1.0
CE1 B:HIS231 4.0 10.4 1.0
CG B:HIS60 4.2 27.1 1.0
ND1 B:HIS60 4.3 26.2 1.0
CE1 B:HIS204 4.3 12.6 1.0
ND1 B:HIS42 4.3 19.1 1.0
NE2 B:HIS204 4.4 13.0 1.0
NE2 B:HIS208 4.4 16.0 1.0
CG B:HIS42 4.6 16.4 1.0
ND1 B:HIS69 4.7 9.1 1.0
CD2 B:HIS231 4.7 14.9 1.0
CD2 B:HIS208 4.8 19.0 1.0
CG B:HIS69 4.8 8.5 1.0

Reference:

M.Goldfeder, M.Egozy, V.Shuster Ben-Yosef, N.Adir, A.Fishman. Changes in Tyrosinase Specificity By Ionic Liquids and Sodium Dodecyl Sulfate. Appl.Microbiol.Biotechnol. V. 97 1953 2013.
ISSN: ISSN 0175-7598
PubMed: 22539021
DOI: 10.1007/S00253-012-4050-Z
Page generated: Fri Sep 4 10:59:05 2020
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